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3C

Euk-Vir

Canine_picodicistrovirus

3C__YP_007947667__Canine_picodicistrovirus__1150861

Identity

Accession:
YP_007947667 ↗
Protein ID:
3C
Kingdom:
euk

Quality

92.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-86
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 79.0 7.62e-01 100.0% 89.1%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 65.0 6.36e-01 100.0% 84.3%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 63.0 6.05e-01 100.0% 80.4%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 64.0 6.32e-01 100.0% 89.4%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 62.0 4.53e-01 100.0% 36.5%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 66.0 6.01e-01 100.0% 76.4%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 66.0 6.09e-01 97.6% 82.2%
4kkdB04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 60.0 5.18e-01 92.7% 78.2%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 59.0 5.28e-01 92.7% 74.1%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 57.0 5.26e-01 90.2% 76.0%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 58.0 5.28e-01 92.7% 75.7%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 56.0 5.41e-01 93.9% 84.9%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 45.0 4.23e-01 72.0% 69.4%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 53.0 4.50e-01 90.2% 81.2%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 55.0 4.49e-01 93.9% 73.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 53.0 4.39e-01 96.3% 78.9%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 4.37e-01 96.3% 74.8%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 4.35e-01 96.3% 74.8%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 4.17e-01 93.9% 76.7%
4g29A00 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.60 43.0 3.49e-01 76.8% 67.5%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 43.0 4.70e-01 76.8% 100.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.59 50.0 4.57e-01 92.7% 72.5%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 4.13e-01 74.4% 75.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 4.13e-01 93.9% 64.3%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 38.0 3.58e-01 72.0% 67.6%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 41.0 4.29e-01 92.7% 89.0%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 4.12e-01 97.6% 87.7%
5j11C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.63e-01 74.4% 74.5%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 4.08e-01 92.7% 75.2%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 36.0 2.86e-01 70.7% 81.4%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 2.82e-01 74.4% 84.7%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.50 35.0 2.75e-01 73.2% 52.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251320 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.73 66.0 4.62e-01 100.0% 33.7%
3218403 1.1.5.73 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin, DUF316 0.73 67.0 4.47e-01 100.0% 47.5%
3989070 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 64.0 4.64e-01 97.6% 45.9%
3682203 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.70 64.0 4.72e-01 100.0% 45.4%
3650249 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 64.0 4.49e-01 100.0% 34.7%
3916755 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 63.0 4.28e-01 100.0% 42.1%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 64.0 4.33e-01 100.0% 31.3%
3630080 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 63.0 4.13e-01 98.8% 40.3%
2129789 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.68 54.0 5.81e-01 87.8% 100.0%
3377696 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.68 62.0 4.59e-01 100.0% 42.0%
3724875 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 61.0 4.09e-01 100.0% 36.3%
3236876 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.67 61.0 4.17e-01 100.0% 49.8%
3991786 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 59.0 4.03e-01 97.6% 39.2%
3727317 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.67 60.0 4.05e-01 100.0% 33.8%
3731870 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.67 61.0 3.99e-01 100.0% 30.2%
1037154 1.1.5.34 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.64 55.0 4.44e-01 93.9% 71.2%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.63 54.0 5.31e-01 95.1% 97.8%
3283478 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 51.0 4.22e-01 95.1% 82.0%
3179842 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.58 41.0 3.61e-01 73.2% 64.2%
4216863 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.54e-01 92.7% 100.0%
3243722 3792.1.1.0 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.52 44.0 4.12e-01 96.3% 75.0%
3924486 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.52 43.0 2.64e-01 90.2% 54.9%
4049252 11.1.4.102 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SOP4 0.51 45.0 3.75e-01 100.0% 80.0%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.51 35.0 2.87e-01 70.7% 89.6%
D2 high residues 113-191
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00548.27 best Peptidase_C3 33.6 5.30e-08 89.9% 33.1%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.90 82.0 6.04e-01 100.0% 42.2%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.87 81.0 7.34e-01 100.0% 86.4%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 77.0 7.03e-01 100.0% 77.8%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.83 78.0 6.93e-01 100.0% 79.4%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 75.0 6.74e-01 100.0% 74.5%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 76.0 6.75e-01 100.0% 80.4%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 72.0 6.50e-01 100.0% 77.9%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 70.0 6.40e-01 100.0% 88.3%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 70.0 6.54e-01 100.0% 81.1%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 66.0 5.87e-01 100.0% 69.4%
1lvoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 56.0 5.40e-01 100.0% 75.0%
1autC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 65.0 5.40e-01 100.0% 76.9%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 64.0 5.78e-01 100.0% 76.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 60.0 4.85e-01 100.0% 56.5%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.58 51.0 4.55e-01 100.0% 91.3%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.57 33.0 3.13e-01 100.0% 46.8%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.83e-01 86.1% 63.7%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 42.0 4.04e-01 96.2% 70.3%
1r62A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 49.0 4.12e-01 100.0% 94.1%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 34.0 3.18e-01 89.9% 50.5%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 36.0 2.60e-01 70.9% 86.4%
4twlA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.51 43.0 3.18e-01 100.0% 54.0%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 31.0 2.68e-01 100.0% 34.5%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.50 34.0 3.12e-01 100.0% 52.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3066474 1.1.17.2 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.92 85.0 6.06e-01 100.0% 37.5%
2779726 1.1.17.2 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.90 82.0 6.01e-01 100.0% 40.9%
376155 1.1.17.2 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.90 85.0 6.08e-01 100.0% 39.8%
261 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.89 83.0 5.91e-01 100.0% 42.0%
3816110 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.84 69.0 4.87e-01 100.0% 30.7%
4683578 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.84 78.0 5.48e-01 100.0% 36.9%
2141907 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.82 76.0 5.52e-01 100.0% 43.2%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 74.0 4.98e-01 100.0% 29.1%
3650249 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 74.0 5.08e-01 100.0% 33.9%
5019852 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 73.0 5.27e-01 100.0% 39.0%
3960372 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 63.0 6.13e-01 100.0% 80.0%
5051302 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 65.0 4.62e-01 100.0% 33.8%
5039871 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 68.0 4.60e-01 100.0% 32.3%
1099000 1.1.5.19 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.73 57.0 4.29e-01 100.0% 35.7%
4911687 1.1.5.19 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.72 56.0 4.50e-01 100.0% 42.0%
3783835 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 66.0 4.47e-01 100.0% 41.9%
3244773 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.71 63.0 4.30e-01 100.0% 29.2%
4852372 1.1.5.19 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.71 55.0 4.15e-01 100.0% 34.6%
3229859 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.70 60.0 4.18e-01 100.0% 29.4%
3187986 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 52.0 4.77e-01 92.4% 72.4%
3509747 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.61 46.0 3.60e-01 82.3% 94.4%
3304610 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.60 47.0 3.63e-01 86.1% 93.7%
3251635 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.83e-01 83.5% 56.4%
5034970 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.83e-01 86.1% 63.0%
3275748 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.12e-01 88.6% 76.8%
4994169 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 45.0 4.33e-01 100.0% 81.1%
3964118 11.14.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 0.53 41.0 3.94e-01 100.0% 72.3%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.60e-01 100.0% 68.2%
4549698 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.50 34.0 3.25e-01 100.0% 58.9%