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3C

Euk-Vir

Eel_picornavirus_1

3C__YP_008549609__Eel_picornavirus_1__1398149

Identity

Accession:
YP_008549609 ↗
Protein ID:
3C
Kingdom:
euk

Quality

84.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Potamipivirus› potamipivirus_A1

TaxID: 1398149

Cluster

View cluster (187 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-99
PDB
Domain cluster: rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 71.0 7.37e-01 94.9% 100.0%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 65.0 5.27e-01 99.0% 47.2%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 59.0 6.31e-01 92.9% 98.8%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 63.0 6.55e-01 97.0% 98.9%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 55.0 3.83e-01 100.0% 25.6%
2r0lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 60.0 5.76e-01 87.9% 88.5%
1p57B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 60.0 5.66e-01 87.9% 79.7%
5lpeB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 57.0 5.94e-01 87.9% 89.2%
1p3cA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 61.0 5.89e-01 89.9% 87.3%
6mv4H02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 60.0 5.80e-01 87.9% 88.0%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 59.0 5.72e-01 87.9% 87.3%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 59.0 5.92e-01 87.9% 89.2%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 59.0 5.74e-01 87.9% 89.7%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 59.0 5.61e-01 87.9% 85.0%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 56.0 6.09e-01 87.9% 100.0%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 57.0 6.05e-01 85.9% 100.0%
1ekbB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.66e-01 87.9% 89.9%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 58.0 5.75e-01 87.9% 88.5%
1orfA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 59.0 5.77e-01 87.9% 87.6%
2qy0B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 58.0 5.63e-01 87.9% 88.9%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 58.0 5.57e-01 87.9% 82.9%
1eq9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 58.0 5.67e-01 87.9% 88.6%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 58.0 5.64e-01 87.9% 87.9%
1ao5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 57.0 5.45e-01 87.9% 88.7%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.79e-01 72.7% 92.9%
4y4qA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.55 44.0 3.78e-01 90.9% 96.0%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.56e-01 73.7% 96.2%
4v19R01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.54 37.0 3.65e-01 71.7% 93.8%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.53 37.0 3.68e-01 71.7% 74.8%
4oc8A01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.52 44.0 3.52e-01 97.0% 87.9%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 40.0 3.24e-01 88.9% 40.5%
3rkxA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 43.0 3.46e-01 91.9% 81.0%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 37.0 3.65e-01 73.7% 74.5%
2moqA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.72e-01 88.9% 80.4%
4ftdA01 2.60.40.2340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 4.09e-01 86.9% 88.4%
6w5yC01 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.51 36.0 3.18e-01 71.7% 79.9%
3r6fA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.50 39.0 3.58e-01 82.8% 66.2%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.50 40.0 3.20e-01 88.9% 43.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2779726 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.79 66.0 5.25e-01 100.0% 47.3%
3416144 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.75 59.0 4.49e-01 93.9% 38.6%
3772106 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.73 59.0 4.48e-01 94.9% 38.2%
4520605 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.71 51.0 4.78e-01 99.0% 62.2%
3867774 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 61.0 3.83e-01 94.9% 32.2%
3106034 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 64.0 4.72e-01 99.0% 48.5%
3402456 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 60.0 4.76e-01 92.9% 52.3%
None — 0.69 63.0 4.84e-01 98.0% 48.4%
3490463 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 63.0 4.63e-01 98.0% 46.5%
4883897 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.69 63.0 4.67e-01 100.0% 46.7%
22087 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.68 63.0 4.66e-01 100.0% 46.9%
1217180 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 61.0 4.23e-01 96.0% 36.5%
1826904 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 63.0 4.63e-01 100.0% 46.4%
2512790 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.68 63.0 4.65e-01 100.0% 46.1%
3945667 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.68 62.0 4.56e-01 98.0% 47.7%
1344807 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 59.0 4.43e-01 92.9% 41.6%
4005257 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 62.0 4.61e-01 99.0% 49.6%
3403377 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 61.0 4.48e-01 99.0% 40.8%
3403314 1.1.5.46 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF1986 0.66 61.0 4.71e-01 100.0% 48.8%
3409888 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 58.0 4.24e-01 94.9% 38.8%
3859610 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 60.0 4.54e-01 98.0% 45.3%
3784272 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.65 48.0 4.57e-01 79.8% 90.0%
3401056 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 4.19e-01 76.8% 97.6%
3885459 11.1.1.661 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CD22 0.59 41.0 3.77e-01 71.7% 95.4%
4045155 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.54 38.0 3.70e-01 72.7% 76.4%
3412911 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 37.0 3.55e-01 72.7% 90.4%
3542002 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.46e-01 76.8% 74.3%
4665957 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.53 37.0 3.63e-01 71.7% 69.5%
3408021 3246.1.1.1 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.52 42.0 3.85e-01 87.9% 93.8%
3864149 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.52 36.0 3.29e-01 73.7% 75.7%
3406137 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 36.0 3.38e-01 73.7% 81.5%
3545017 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 35.0 2.25e-01 70.7% 21.4%
3586038 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 36.0 3.23e-01 73.7% 73.8%
3478433 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.32e-01 72.7% 94.6%
3938123 3246.1.1.1 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.51 41.0 3.78e-01 88.9% 93.1%
3591555 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 35.0 3.39e-01 70.7% 98.2%
3246557 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 36.0 3.46e-01 73.7% 91.3%
3828316 220.1.1.205 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 0.50 38.0 3.40e-01 79.8% 78.6%
3491153 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.55e-01 88.9% 87.7%
D2 medium residues 100-199
PDB
Domain cluster: rep: trypsin-like_serine_protease-like_protein__YP_002321313__Oryctes_rhinoceros_nudivirus__92521__D215-339
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00548.27 best Peptidase_C3 28.8 1.50e-06 86.0% 33.7%