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3C

Euk-Vir

gallivirus_A1

3C__YP_009055056__gallivirus_A1__2764087

Identity

Accession:
YP_009055056 ↗
Protein ID:
3C
Kingdom:
euk

Quality

87.5 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Gallivirus› gallivirus_A1

TaxID: 2764087

Cluster

View cluster (187 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73
PDB
Domain cluster: rep: 3C__YP_009111405__torchivirus_A1__1578826__D3-94
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.91 85.0 7.58e-01 100.0% 82.0%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.90 85.0 7.47e-01 100.0% 77.2%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.88 78.0 7.96e-01 100.0% 96.9%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.88 81.0 6.93e-01 100.0% 81.2%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.87 74.0 5.02e-01 91.0% 39.3%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 73.0 6.13e-01 94.0% 74.1%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 74.0 6.21e-01 94.0% 75.7%
1dleA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 77.0 6.10e-01 100.0% 75.2%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 75.0 6.27e-01 100.0% 82.9%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 71.0 6.83e-01 100.0% 82.9%
3fanA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 69.0 6.69e-01 100.0% 84.9%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 72.0 6.45e-01 100.0% 87.0%
1orfA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 67.0 5.76e-01 94.0% 75.2%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 66.0 5.55e-01 94.0% 76.8%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.74 64.0 4.63e-01 97.0% 67.0%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 61.0 5.06e-01 95.5% 81.0%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 62.0 4.99e-01 97.0% 82.5%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 63.0 4.72e-01 100.0% 73.7%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.72 64.0 5.42e-01 98.5% 71.6%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 61.0 4.33e-01 95.5% 60.5%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 62.0 5.10e-01 98.5% 85.5%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 50.0 4.99e-01 82.1% 70.4%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.71 61.0 5.07e-01 98.5% 75.0%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 58.0 5.71e-01 94.0% 87.8%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.69 59.0 5.01e-01 98.5% 92.2%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.65e-01 98.5% 72.7%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 59.0 5.04e-01 98.5% 69.4%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 59.0 4.70e-01 100.0% 78.2%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 4.39e-01 97.0% 69.2%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 54.0 4.94e-01 94.0% 83.2%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 47.0 4.44e-01 74.6% 73.4%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 58.0 5.08e-01 98.5% 76.8%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 55.0 4.91e-01 98.5% 71.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 40.0 3.57e-01 100.0% 45.0%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 46.0 2.94e-01 82.1% 49.7%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 45.0 4.05e-01 85.1% 68.8%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.57 48.0 4.21e-01 100.0% 91.7%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 40.0 2.85e-01 76.1% 76.8%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 3.19e-01 100.0% 47.9%
2wzpP03 2.60.120.880 Mainly Beta › Sandwich › Jelly Rolls › 0.56 39.0 3.22e-01 74.6% 68.5%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.49e-01 73.1% 88.4%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.54 40.0 2.93e-01 80.6% 94.6%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.22e-01 80.6% 92.7%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.53 42.0 3.65e-01 88.1% 57.5%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.99e-01 100.0% 53.7%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 37.0 3.42e-01 85.1% 59.1%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.16e-01 76.1% 66.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838513 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.87 80.0 5.42e-01 100.0% 36.6%
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.87 78.0 5.70e-01 100.0% 39.5%
3503641 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.87 80.0 5.70e-01 100.0% 65.8%
3530898 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.87 79.0 5.11e-01 100.0% 33.9%
3447802 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.86 80.0 7.16e-01 100.0% 81.1%
1096110 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.86 79.0 5.38e-01 100.0% 38.0%
1217153 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.86 79.0 4.98e-01 100.0% 32.7%
3506886 1.1.13.58 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Trypsin 0.86 79.0 5.48e-01 100.0% 62.5%
3962625 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.86 74.0 6.62e-01 92.5% 82.2%
2526961 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.85 78.0 5.31e-01 100.0% 37.1%
None — 0.85 78.0 5.33e-01 100.0% 37.8%
5051302 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.85 78.0 5.27e-01 100.0% 40.4%
3940726 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.85 77.0 5.04e-01 100.0% 35.9%
3394182 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.84 78.0 5.20e-01 100.0% 34.3%
3234434 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.83 77.0 4.98e-01 100.0% 34.4%
4532479 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 77.0 5.10e-01 100.0% 35.4%
3397446 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 76.0 5.05e-01 100.0% 34.4%
3791975 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 75.0 4.87e-01 98.5% 39.6%
3574288 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 76.0 4.93e-01 100.0% 36.4%
4013582 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 76.0 5.82e-01 100.0% 69.0%
4525110 1.1.13.65 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Mycop_pep_DUF31 0.83 75.0 5.86e-01 100.0% 95.0%
3783835 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.83 76.0 4.94e-01 100.0% 31.3%
134809 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 75.0 5.10e-01 100.0% 38.2%
4073608 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.83 75.0 5.41e-01 100.0% 66.7%
2142060 1.1.5.22 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S32 0.82 70.0 4.88e-01 97.0% 30.7%
3225260 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.81 73.0 4.81e-01 100.0% 50.9%
3229867 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.79 72.0 4.74e-01 100.0% 51.0%
4980573 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 51.0 3.65e-01 71.6% 36.3%
3963092 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 64.0 5.73e-01 98.5% 75.8%
3517450 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 65.0 3.62e-01 97.0% 10.5%
4400460 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.73 61.0 4.87e-01 95.5% 75.7%
3950458 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.69 58.0 4.25e-01 92.5% 37.8%
3248403 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 55.0 4.51e-01 94.0% 49.6%
4189243 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 56.0 4.62e-01 98.5% 71.5%
3240647 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.65 42.0 3.39e-01 100.0% 35.2%
3262013 3794.1.1.3 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.62 42.0 3.38e-01 100.0% 36.2%
2570822 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.60 38.0 3.06e-01 100.0% 30.3%
5008200 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 38.0 3.83e-01 98.5% 61.4%
3574630 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.59 42.0 3.47e-01 77.6% 70.8%
3867705 3338.2.1.1 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › Pep_M12B_propep 0.58 44.0 3.59e-01 83.6% 43.1%
3571806 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.57 42.0 3.72e-01 79.1% 52.0%
4181736 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.57 40.0 3.05e-01 88.1% 30.3%
3584364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 37.0 4.17e-01 70.1% 100.0%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 38.0 3.63e-01 95.5% 62.5%
4571832 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.53 38.0 2.77e-01 92.5% 25.4%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.53 34.0 3.28e-01 94.0% 55.0%
3035660 3794.1.1.1 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.51 35.0 2.89e-01 100.0% 35.6%
3270288 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 38.0 3.38e-01 82.1% 74.0%
3961274 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.50 38.0 3.09e-01 98.5% 42.3%
D2 high residues 86-172
PDB
Domain cluster: rep: putative_3C_peptidase__YP_009553718__tremovirus_B1__2058161__D98-201