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3D-pol

Euk-Vir

enterovirus_A114

3D-pol__YP_009268640__enterovirus_A114__2760809

Identity

Accession:: YP_009268640 ↗
Protein ID:: 3D-pol
Kingdom:: euk

Quality

96.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Enterovirus› enterovirus_A114

TaxID: 2760809

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 378-460

PDB

Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481

D2 medium residues 1-70_238-293

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_3D__YP_009508973__Dromedary_camel_enterovirus_19CC__1637527__D1-33_189-201_238-289

D3 medium residues 71-89_207-237_294-376

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	38.5	8.50e-10	65.4%	18.4%
PF02123.22	RdRP_4	25.4	9.30e-06	62.4%	13.6%

D4 medium residues 90-206

PDB

Domain cluster: rep: 3D__YP_009179377__sicinivirus_A1__2773315__D75-149_180-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	49.5	3.90e-13	99.2%	26.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.98	96.0	6.38e-01	100.0%	31.7%
None	—		0.98	95.0	6.36e-01	100.0%	32.0%
5367	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.89	84.0	5.69e-01	100.0%	32.0%
2541763	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.88	84.0	5.67e-01	100.0%	32.5%
1875037	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.79	75.0	5.05e-01	100.0%	30.6%
3691350	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.64	58.0	4.43e-01	100.0%	84.4%
3267570	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.63	58.0	4.09e-01	100.0%	51.4%
3250871	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.63	55.0	5.11e-01	96.6%	84.0%
5018572	304.48.1.72 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_N	0.60	55.0	4.72e-01	100.0%	67.8%