3D

Euk-Vir

Aichi_virus_1

3D__NP_740444__Aichi_virus_1__1313215

Identity

95.6 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Kobuvirus› aichivirus_A1

TaxID: 1313215

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 381-467

PDB

Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481

D2 medium residues 51-87_242-280

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vlaA01	1.10.10.2080	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.69	37.0	3.71e-01	78.9%	51.3%
4lqkA00	1.10.437.20	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus	0.65	46.0	3.86e-01	75.0%	60.6%
5jjxA01	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.64	44.0	2.96e-01	72.4%	34.0%
2di3B02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.58	36.0	2.86e-01	85.5%	30.3%
3uo2A01	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.52	34.0	3.44e-01	92.1%	65.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3502321	103.1.1.86 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28543	0.53	31.0	3.30e-01	85.5%	66.2%
3503383	7579.1.1.44 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6	0.52	39.0	2.76e-01	82.9%	83.3%
5068349	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.52	39.0	3.39e-01	81.6%	83.3%
3946728	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.50	35.0	3.27e-01	92.1%	57.0%

D3 medium residues 88-205_281-293

PDB

Domain cluster: rep: 3D__YP_009179377__sicinivirus_A1__2773315__D75-149_180-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	55.7	5.20e-15	100.0%	29.1%

D4 medium residues 206-241_294-380

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	39.3	5.00e-10	71.5%	20.4%