←Back to structures

3D

Euk-Vir

Cosavirus_E

3D__YP_002956087__Cosavirus_E__2003651

Identity

Accession:
YP_002956087 ↗
Protein ID:
3D
Kingdom:
euk

Quality

95.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Cosavirus› Cosavirus_E

TaxID: 2003651

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 382-459
PDB
Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481
D2 medium residues 1-59_156-180_266-294
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase_3D__YP_009508973__Dromedary_camel_enterovirus_19CC__1637527__D1-33_189-201_238-289
D3 medium residues 60-90_213-265_295-381
PDB
Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00680.26 best RdRP_1 46.5 3.20e-12 56.1% 20.4%
PF02123.22 RdRP_4 26.1 5.70e-06 48.5% 14.2%
PF00680.26 RdRP_1 24.3 1.80e-05 38.6% 12.2%
D4 medium residues 91-155_181-212
PDB
Domain cluster: rep: 3D__YP_009179377__sicinivirus_A1__2773315__D75-149_180-201
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qf3D00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 44.0 4.09e-01 94.8% 80.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5367 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.94 90.0 5.77e-01 100.0% 32.5%
2541763 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.87 82.0 5.32e-01 100.0% 32.8%
None — 0.83 79.0 5.11e-01 100.0% 32.5%
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.82 77.0 5.04e-01 100.0% 32.5%