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3D
Euk-VirCanine_picornavirus
3D__YP_005352655__Canine_picornavirus__1196647
Identity
- Accession:
- YP_005352655 ↗
- Protein ID:
- 3D
- Kingdom:
- euk
Quality
96.5
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Picornaviridae›
Mischivirus›
Canine_picornavirus
TaxID: 1196647
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 376-460
D2
medium
residues 1-203_258-291
Domain cluster:
rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 66.7 | 2.40e-18 | 78.9% | 44.2% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pggA01 | 3.90.1730.10 | Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain | 0.64 | 60.0 | 5.21e-01 | 98.7% | 92.7% |
| 3qwwA01 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.51 | 16.0 | 2.48e-01 | 97.5% | 65.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1173784 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.97 | 96.0 | 7.94e-01 | 100.0% | 79.1% |
| None | — | 0.97 | 95.0 | 7.90e-01 | 100.0% | 79.2% | |
| 5367 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.93 | 90.0 | 7.45e-01 | 100.0% | 79.6% |
| 2541763 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.90 | 88.0 | 7.28e-01 | 100.0% | 79.5% |
| 1875037 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.83 | 79.0 | 6.55e-01 | 99.2% | 77.1% |
| 1279063 | 304.48.1.13 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 | 0.78 | 74.0 | 5.90e-01 | 100.0% | 69.8% |
| None | — | 0.74 | 70.0 | 5.37e-01 | 99.6% | 83.6% | |
| 2994348 | 304.48.1.9 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1,CoV_RPol_N | 0.74 | 70.0 | 4.54e-01 | 99.6% | 31.5% |
| 1699894 | 304.48.2.2 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm | 0.73 | 69.0 | 5.23e-01 | 99.6% | 68.3% |
| 4871000 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.72 | 67.0 | 6.43e-01 | 97.5% | 92.1% |
| 217141 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.69 | 66.0 | 5.66e-01 | 100.0% | 75.6% |
| 5369 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.69 | 65.0 | 5.03e-01 | 99.6% | 80.4% |
| 3258406 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.68 | 59.0 | 4.43e-01 | 92.0% | 50.3% |
| 3918122 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.64 | 56.0 | 4.69e-01 | 92.0% | 65.3% |
D3
medium
residues 204-257_292-375
Domain cluster:
rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 28.9 | 7.10e-07 | 62.3% | 20.0% |
| PF00680.26 | RdRP_1 | 25.5 | 7.40e-06 | 39.9% | 11.8% |