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3D

Euk-Vir

Bovine_hungarovirus_1

3D__YP_006846327__Bovine_hungarovirus_1__1431464

Identity

Accession:: YP_006846327 ↗
Protein ID:: 3D
Kingdom:: euk

Quality

95.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Hunnivirus› hunnivirus_A1

TaxID: 1431464

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 381-453

PDB

Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481

D2 medium residues 43-60_91-214

PDB

Domain cluster: rep: 3D__YP_009179377__sicinivirus_A1__2773315__D75-149_180-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	61.9	6.80e-17	96.5%	26.2%

D3 medium residues 61-90_241-273

PDB

Domain cluster: representative

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ulyA02	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.71	39.0	3.26e-01	100.0%	32.7%
8p2bA01	3.90.1010.20	Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A ›	0.70	43.0	3.99e-01	73.0%	50.0%
2y39A00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.69	37.0	3.06e-01	100.0%	29.1%
1urfA00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.64	34.0	3.15e-01	100.0%	39.5%
2ktmA00	1.10.790.10	Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain	0.64	36.0	3.57e-01	100.0%	51.5%
2ch7A00	1.10.287.950	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein	0.63	35.0	2.22e-01	100.0%	10.7%
4jbeB01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.62	50.0	3.28e-01	88.9%	84.6%
1xfiA02	1.20.1700.10	Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like	0.59	36.0	3.26e-01	100.0%	43.3%
2q5zB00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.58	38.0	3.29e-01	100.0%	44.7%
1vp7A00	1.10.287.1040	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit	0.58	34.0	3.33e-01	85.7%	51.5%
2jrmA00	1.10.10.620	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain	0.57	38.0	3.92e-01	76.2%	73.3%
3dnfA03	3.40.1010.20	Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain	0.57	38.0	3.39e-01	73.0%	45.5%
3t69A02	3.30.420.310	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain	0.57	47.0	3.29e-01	96.8%	43.8%
2rn7A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	39.0	3.91e-01	74.6%	72.7%
4ewcA03	1.20.120.1660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.54	39.0	3.68e-01	76.2%	66.7%
4mk3A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	42.0	3.52e-01	90.5%	92.2%
3tklB01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	38.0	3.87e-01	76.2%	83.9%
1bvp101	1.10.250.10	Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1	0.52	36.0	2.93e-01	92.1%	37.5%
1vx7301	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	36.0	3.41e-01	71.4%	64.9%
3qo8A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.52	36.0	2.96e-01	71.4%	47.2%
2gtaA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.52	35.0	3.18e-01	73.0%	81.4%
4l8jA04	1.10.287.470	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.51	35.0	3.62e-01	73.0%	76.3%
4id0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	42.0	3.50e-01	93.7%	91.1%
3kfwX03	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	35.0	3.35e-01	74.6%	84.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3202970	1075.1.2.12 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › EMP70	0.65	46.0	3.40e-01	74.6%	54.7%
3875862	192.7.1.83 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › KIF9	0.63	37.0	2.89e-01	100.0%	29.6%
3388445	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.62	34.0	3.41e-01	100.0%	50.8%
3918735	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.56	46.0	3.81e-01	93.7%	80.0%
5078040	5069.1.3.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits	0.55	39.0	3.62e-01	77.8%	91.8%
3838596	2008.1.1.85 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII	0.55	47.0	3.39e-01	100.0%	35.1%
4946571	2008.1.1.85 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII	0.53	46.0	3.28e-01	100.0%	36.1%
3270478	6155.1.1.4 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC	0.52	37.0	3.21e-01	76.2%	71.4%
3676480	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.52	38.0	3.33e-01	76.2%	77.8%
5049956	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.52	37.0	3.77e-01	100.0%	78.3%
3531423	5106.1.1.14 ↗	extended segments › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › TMEM174	0.51	35.0	3.73e-01	71.4%	83.6%
3483479	101.8.1.0 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases	0.50	42.0	3.01e-01	92.1%	38.9%

D4 medium residues 215-240_301-380

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	27.3	2.10e-06	76.4%	20.0%