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3D
Euk-VirCanine_picodicistrovirus
3D__YP_007947668__Canine_picodicistrovirus__1150861
Identity
- Accession:
- YP_007947668 ↗
- Protein ID:
- 3D
- Kingdom:
- euk
Quality
94.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Picornaviridae›
Dicipivirus›
Canine_picodicistrovirus
TaxID: 1150861
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 386-479
Domain cluster:
rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ra6A03 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.90 | 80.0 | 8.36e-01 | 93.6% | 100.0% |
| 3nkyA03 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.85 | 63.0 | 7.06e-01 | 81.9% | 98.6% |
| 2ckwA04 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.78 | 67.0 | 6.47e-01 | 93.6% | 94.4% |
| 1khvA05 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.77 | 66.0 | 6.58e-01 | 92.6% | 100.0% |
| 4qhpA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.65 | 50.0 | 3.45e-01 | 83.0% | 27.8% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.65 | 50.0 | 4.89e-01 | 83.0% | 82.9% |
| 5ab0C04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.61 | 53.0 | 3.66e-01 | 97.9% | 73.9% |
| 4ksaA02 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.58 | 45.0 | 4.04e-01 | 84.0% | 89.8% |
| 2l1lB00 | 1.20.1440.250 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.55 | 42.0 | 3.89e-01 | 84.0% | 68.5% |
| 4dmbB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 37.0 | 3.00e-01 | 74.5% | 63.2% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.51 | 40.0 | 3.44e-01 | 86.2% | 83.3% |
| 8el7B01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 39.0 | 2.75e-01 | 87.2% | 34.6% |
| 4jykA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 41.0 | 3.68e-01 | 93.6% | 74.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2541767 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.93 | 85.0 | 8.48e-01 | 95.7% | 93.8% |
| 1519288 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.90 | 82.0 | 8.13e-01 | 95.7% | 91.8% |
| 2390376 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.88 | 79.0 | 7.63e-01 | 100.0% | 85.4% |
| 1147677 | 4967.1.1.2 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_1 | 0.88 | 71.0 | 7.43e-01 | 94.7% | 92.0% |
| 3092371 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.83 | 73.0 | 7.09e-01 | 94.7% | 93.1% |
| 3572779 | 3855.1.1.1 ↗ | alpha arrays › Serum amyloid A-1 protein › Serum amyloid A-1 protein › Serum amyloid A-1 protein › SAA | 0.63 | 49.0 | 4.65e-01 | 83.0% | 86.4% |
| 3287720 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 43.0 | 3.20e-01 | 72.3% | 30.4% |
| 2029562 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 3.82e-01 | 84.0% | 53.3% |
| 4996381 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.61 | 54.0 | 3.62e-01 | 100.0% | 61.5% |
| 3269613 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.57 | 44.0 | 2.86e-01 | 83.0% | 26.7% |
| 3702847 | 109.4.1.83 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf | 0.56 | 47.0 | 3.42e-01 | 95.7% | 53.2% |
| 3507546 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 42.0 | 2.98e-01 | 83.0% | 30.7% |
| None | — | 0.55 | 42.0 | 3.16e-01 | 83.0% | 60.0% | |
| 3612740 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.36e-01 | 95.7% | 51.8% |
| 3684662 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 49.0 | 3.55e-01 | 100.0% | 55.0% |
| 3818504 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 49.0 | 3.69e-01 | 98.9% | 65.0% |
| 3826048 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 48.0 | 3.37e-01 | 98.9% | 36.2% |
| 4572672 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.53 | 36.0 | 2.44e-01 | 70.2% | 59.2% |
| 3718902 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 3.27e-01 | 97.9% | 63.1% |
| 4021374 | 3082.1.1.0 ↗ | extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 | 0.52 | 44.0 | 2.99e-01 | 94.7% | 67.9% |
| 4268079 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 40.0 | 2.62e-01 | 88.3% | 65.8% |
D2
medium
residues 33-205_254-295
Domain cluster:
rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 43.1 | 3.40e-11 | 94.0% | 27.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pggA01 | 3.90.1730.10 | Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain | 0.69 | 64.0 | 5.38e-01 | 98.1% | 75.8% |
| 1khvA04 | 6.10.140.320 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 18.0 | 3.50e-01 | 87.9% | 94.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2541763 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.91 | 89.0 | 7.12e-01 | 100.0% | 69.3% |
| 5367 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.90 | 87.0 | 6.94e-01 | 100.0% | 69.6% |
| 1173784 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.88 | 86.0 | 6.90e-01 | 100.0% | 67.8% |
| None | — | 0.86 | 83.0 | 6.71e-01 | 100.0% | 67.8% | |
| 1875037 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.80 | 77.0 | 6.15e-01 | 100.0% | 67.0% |
| 4871000 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.74 | 62.0 | 5.69e-01 | 85.6% | 85.3% |
| 1279063 | 304.48.1.13 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 | 0.74 | 70.0 | 5.44e-01 | 100.0% | 59.5% |
| 3938749 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.69 | 63.0 | 5.22e-01 | 97.7% | 68.9% |
| 3792091 | 304.48.1.25 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 | 0.64 | 50.0 | 4.25e-01 | 80.5% | 57.7% |
| 3241316 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.62 | 57.0 | 4.88e-01 | 98.1% | 72.8% |
D3
medium
residues 206-253_296-385
Domain cluster:
rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 29.9 | 3.60e-07 | 68.1% | 21.8% |