3D

Euk-Vir

Caprine_kobuvirus

3D__YP_009001380__Caprine_kobuvirus__1452516

Identity

95.3 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Kobuvirus› Caprine_kobuvirus

TaxID: 1452516

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 377-466

PDB

Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481

D2 medium residues 1-81

PDB

Domain cluster: rep: 3D_protein__YP_008119844__Sebokele_virus_1__1294177__D1-65

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2541763	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.82	76.0	4.80e-01	100.0%	21.9%
3608984	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.52	37.0	2.21e-01	79.0%	43.4%

D3 medium residues 82-203

PDB

Domain cluster: rep: 3D__YP_009179377__sicinivirus_A1__2773315__D75-149_180-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	47.6	1.50e-12	99.2%	26.7%

D4 medium residues 204-242_286-376

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	43.4	2.80e-11	70.8%	21.6%