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3D

Euk-Vir

African_bat_icavirus_PREDICT-06105

3D__YP_009121765__African_bat_icavirus_PREDICT-06105__2003501

Identity

Accession:
YP_009121765 ↗
Protein ID:
3D
Kingdom:
euk

Quality

95.7 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Mischivirus› mischivirus_C1

TaxID: 2003501

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 392-464
PDB
Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481
D2 medium residues 1-63_155-204_253-300
PDB
Domain cluster: rep: 3D__YP_009361828__Miniopterus_schreibersii_picornavirus_1__1195365__D46-86_156-182_243-303
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00680.26 best RdRP_1 45.3 7.70e-12 44.7% 12.2%
D3 medium residues 64-83_205-252_301-391
PDB
Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00680.26 best RdRP_1 55.7 5.20e-15 61.6% 22.0%
PF00680.26 RdRP_1 29.5 4.50e-07 27.0% 8.4%
D4 medium residues 84-154
PDB
Domain cluster: representative
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5367 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.94 88.0 5.32e-01 100.0% 18.5%
2541763 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.82 75.0 4.59e-01 100.0% 18.7%
None — 0.80 70.0 4.33e-01 100.0% 18.3%
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.76 68.0 4.23e-01 97.2% 48.5%
3664145 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.50 35.0 2.62e-01 74.6% 33.2%