3D

Euk-Vir

Tortoise_rafivirus_A

3D__YP_009241363__Tortoise_rafivirus_A__1483681

Identity

92.2 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Tortoise_rafivirus_A

TaxID: 1483681

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 386-463

PDB

Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481

D2 medium residues 52-71_105-131_153-179_240-261

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337735__Wenling_sobemo-like_virus_2__1923541__D4-91_185-200

D3 medium residues 72-104_132-152_180-207_262-294

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.61	56.0	4.82e-01	100.0%	91.5%
1khvA04	6.10.140.320	Special › Helix non-globular › Helix Hairpins ›	0.55	20.0	2.89e-01	85.2%	68.5%
2obpA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	30.0	3.50e-01	89.6%	77.8%
4rs8A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	29.0	3.36e-01	84.3%	73.8%
4hw0C00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	28.0	3.12e-01	85.2%	66.7%
8agaA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	29.0	2.88e-01	85.2%	51.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5367	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.94	90.0	6.01e-01	100.0%	60.3%
None	—		0.89	85.0	5.71e-01	100.0%	59.3%
5058068	101.1.2.150 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_45	0.50	28.0	3.16e-01	85.2%	68.9%

D4 medium residues 208-239_295-385

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_529897__Newbury_agent_1__331642__D58-79_192-241_281-399

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	35.0	9.70e-09	73.2%	20.7%