3D

Euk-Vir

Turkey_avisivirus

3D__YP_009508929__Turkey_avisivirus__1293536

Identity

92.3 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Avisivirus› Turkey_avisivirus

TaxID: 1293536

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 376-456

PDB

Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481

D2 medium residues 1-15_237-289

PDB

Domain cluster: rep: 3D__NP_740536__Enterovirus_A__138948__D1-16_240-289

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4bndA02	3.30.1240.20	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain	0.59	32.0	2.91e-01	97.1%	35.4%
2amyA02	3.30.1240.20	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain	0.54	32.0	2.87e-01	75.0%	39.2%
1nklA00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.52	34.0	3.31e-01	77.9%	59.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.90	83.0	5.07e-01	100.0%	78.6%
None	—		0.85	78.0	4.78e-01	100.0%	79.0%
3599569	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.57	35.0	3.17e-01	75.0%	42.0%
2075912	3012.1.1.2 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PMM	0.57	34.0	3.00e-01	75.0%	40.0%
3245927	5067.1.1.3 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched	0.55	46.0	2.58e-01	95.6%	43.3%
4188749	101.1.2.20 ↗	alpha arrays › HTH › HTH › winged helix domain › Arg_repressor	0.54	31.0	2.96e-01	72.1%	46.3%
3296862	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.53	30.0	2.95e-01	72.1%	48.0%
3193553	101.1.2.212 ↗	alpha arrays › HTH › HTH › winged helix domain › Cac1_C	0.52	35.0	3.55e-01	77.9%	72.3%
3493997	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.52	29.0	2.88e-01	72.1%	46.7%

D3 medium residues 36-62_90-197

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337735__Wenling_sobemo-like_virus_2__1923541__D4-91_185-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	49.9	2.90e-13	97.8%	31.3%

D4 medium residues 63-89_198-236_290-375

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	33.6	2.70e-08	56.6%	20.9%