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3D_mature_peptide
Euk-VirHepatovirus_A
3D_mature_peptide__NP_740559__Hepatovirus_A__12092
Identity
- Accession:
- NP_740559 ↗
- Protein ID:
- 3D_mature_peptide
- Kingdom:
- euk
Quality
89.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Picornaviridae›
Hepatovirus›
Hepatovirus_A
TaxID: 12092
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-22_59-209_252-305
Domain cluster:
rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 132.8 | 2.10e-38 | 68.7% | 33.3% |
| PF00680.26 | RdRP_1 | 41.7 | 9.20e-11 | 24.2% | 12.7% |
D2
medium
residues 23-58_403-489
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 49.0 | 5.60e-13 | 73.2% | 13.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4paaA03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.55 | 33.0 | 2.90e-01 | 84.6% | 39.2% |
| 3islA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 34.0 | 3.43e-01 | 92.7% | 63.3% |
| 1n4kA02 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.50 | 36.0 | 3.37e-01 | 73.2% | 83.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3241652 | 3978.1.1.1 ↗ | alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase | 0.66 | 45.0 | 3.16e-01 | 70.7% | 84.4% |
| 3811225 | 109.4.1.44 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 | 0.60 | 42.0 | 3.39e-01 | 73.2% | 79.6% |
| 3742998 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.54 | 42.0 | 3.65e-01 | 82.1% | 55.0% |
| 3709594 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 3.64e-01 | 89.4% | 63.9% |
D3
medium
residues 210-251_306-402
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 80.2 | 2.00e-22 | 71.2% | 21.1% |
| PF00680.26 | RdRP_1 | 36.7 | 3.10e-09 | 31.6% | 9.3% |