3b_protein

Euk-Vir

Duck_coronavirus

3b_protein__YP_009825010__Duck_coronavirus__300188

Identity

79.0 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Gammacoronavirus› Duck_coronavirus

TaxID: 300188

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-49

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03622.20 best	IBV_3B	29.9	5.70e-07	100.0%	68.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8d3mA02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.83	61.0	3.74e-01	93.5%	15.0%
3laaA00	2.150.10.10	Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal	0.77	53.0	3.49e-01	71.7%	29.6%
3purA01	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.55	39.0	3.47e-01	80.4%	62.2%
2af6A01	3.30.70.3180	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	41.0	2.85e-01	82.6%	42.7%
2x3lA01	3.90.1150.150	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.52	41.0	3.02e-01	82.6%	82.9%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4345162	304.48.1.11 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol	0.86	56.0	3.75e-01	89.1%	19.4%
3641442	101.1.1.121 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3	0.65	56.0	4.22e-01	93.5%	43.8%
3610460	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.61	48.0	3.92e-01	82.6%	96.2%
4676848	304.24.1.3 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III	0.60	35.0	2.93e-01	76.1%	28.0%
3180057	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.58	38.0	4.03e-01	71.7%	88.9%
4983462	12.1.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain	0.56	46.0	4.02e-01	87.0%	100.0%
3936316	391.1.1.7 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2	0.55	37.0	3.53e-01	71.7%	69.1%
4426232	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.52	41.0	3.28e-01	87.0%	52.2%
3475266	7579.1.1.20 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT	0.51	41.0	2.42e-01	91.3%	23.4%