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48_kDa_protein
Euk-VirLettuce_ring_necrosis_virus
48_kDa_protein__YP_053239__Lettuce_ring_necrosis_virus__274495
Identity
- Accession:
- YP_053239 ↗
- Protein ID:
- 48_kDa_protein
- Kingdom:
- euk
Quality
49.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Milneviricetes›
Naedrevirales›
Aspiviridae›
Ophiovirus›
Lettuce_ring_necrosis_virus
TaxID: 274495
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-71
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 44.0 | 4.02e-01 | 75.4% | 88.0% |
| 8amzP01 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 43.0 | 2.74e-01 | 76.9% | 18.4% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 3.29e-01 | 76.9% | 49.3% |
| 2c43A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 42.0 | 3.44e-01 | 89.2% | 45.5% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 45.0 | 3.04e-01 | 98.5% | 54.9% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.58e-01 | 100.0% | 71.7% |
| 4lq0A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 36.0 | 2.93e-01 | 76.9% | 60.5% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.52 | 35.0 | 3.09e-01 | 72.3% | 54.6% |
| 3qphA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 45.0 | 3.95e-01 | 98.5% | 76.3% |
| 2pg4A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 3.98e-01 | 100.0% | 86.8% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.51 | 35.0 | 3.23e-01 | 72.3% | 93.2% |
| 1yt5A01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.51 | 39.0 | 3.28e-01 | 89.2% | 92.3% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 40.0 | 3.24e-01 | 90.8% | 85.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261727 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.65 | 48.0 | 4.12e-01 | 83.1% | 91.3% |
| 3721924 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.63 | 53.0 | 3.77e-01 | 96.9% | 42.4% |
| 3439131 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.59 | 42.0 | 3.63e-01 | 76.9% | 83.5% |
| 5013990 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 3.46e-01 | 75.4% | 83.3% |
| 4297810 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.58 | 43.0 | 3.96e-01 | 80.0% | 82.2% |
| 3907766 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 3.51e-01 | 76.9% | 73.6% |
| 3487912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 3.55e-01 | 78.5% | 90.0% |
| 4941351 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 48.0 | 4.45e-01 | 98.5% | 95.3% |
| 4301843 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.54 | 38.0 | 2.72e-01 | 73.8% | 99.0% |
| 3621931 | 109.4.1.143 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ric8 | 0.52 | 37.0 | 2.21e-01 | 76.9% | 13.5% |
| 4025741 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.51 | 37.0 | 2.73e-01 | 76.9% | 57.2% |
| 5082110 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 3.58e-01 | 72.3% | 76.7% |
| 3434561 | 101.1.6.36 ↗ | alpha arrays › HTH › HTH › TrpR › PF28509 | 0.50 | 40.0 | 3.31e-01 | 92.3% | 93.1% |
D2
high
residues 105-277
D3
medium
residues 353-436