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5-3_exoribonuclease_1

Euk-Vir

Anopheles_minimus_iridovirus

5-3_exoribonuclease_1__YP_009021199__Anopheles_minimus_iridovirus__1465751

Identity

Accession:
YP_009021199 ↗
Protein ID:
5-3_exoribonuclease_1
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Chloriridovirus› Chloriridovirus_anopheles1

TaxID: 1465751

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55_68-240
PDB
Domain cluster: rep: Hypothetical_protein_SPPV_50__NP_659626__Sheeppox_virus__10266__D1-82_143-236
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03159.25 best XRN_N 88.2 8.00e-25 48.9% 42.3%
PF03159.25 XRN_N 68.8 7.10e-19 48.4% 45.2%
D2 high residues 465-541
PDB
D3 medium residues 241-379
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17846.7 best XRN_M 47.6 1.80e-12 67.6% 15.7%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.57 45.0 3.79e-01 84.9% 66.0%
5mrvA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 40.0 3.11e-01 75.5% 95.4%
2uvaG06 1.20.930.70 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.52 25.0 2.75e-01 84.2% 50.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716031 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.78 65.0 5.03e-01 100.0% 42.1%
3595158 3279.1.1.0 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases 0.78 65.0 5.06e-01 100.0% 43.6%
4027649 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.76 64.0 4.99e-01 100.0% 44.3%
3473140 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.75 64.0 4.86e-01 99.3% 41.7%
3600228 3279.1.1.0 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases 0.74 65.0 4.93e-01 100.0% 42.6%
3684346 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.72 68.0 5.09e-01 100.0% 47.0%
4144327 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.72 63.0 4.72e-01 97.8% 41.3%
3608857 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.70 65.0 5.03e-01 100.0% 66.2%
3175375 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.69 64.0 4.69e-01 98.6% 50.3%
4017552 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.68 64.0 5.10e-01 100.0% 54.6%
3467501 602.1.1.0 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like 0.52 36.0 3.02e-01 70.5% 77.5%
D4 medium residues 380-464
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 34.0 4.17e-01 74.1% 82.7%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.65e-01 80.0% 79.1%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.40e-01 72.9% 88.3%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.64e-01 72.9% 77.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716031 3279.1.1.1 ↗ alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M 0.87 81.0 5.42e-01 100.0% 29.7%
3247203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.71e-01 75.3% 98.9%
3669835 101.1.2.278 ↗ alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.53 38.0 3.89e-01 81.2% 76.5%
4098825 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.65e-01 75.3% 88.9%
3495167 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 4.04e-01 72.9% 95.4%
5046644 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.51 35.0 2.67e-01 71.8% 94.4%
4001404 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.71e-01 71.8% 100.0%
3538344 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.79e-01 76.5% 95.0%
3887950 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 3.85e-01 71.8% 96.7%
3806240 3676.1.1.0 ↗ alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain 0.50 36.0 4.04e-01 75.3% 100.0%