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52K

Euk-Vir

Bat_mastadenovirus_WIV9

52K__YP_009246349__Bat_mastadenovirus_WIV9__1788436

Identity

Accession:: YP_009246349 ↗
Protein ID:: 52K
Kingdom:: euk

Quality

73.9 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Bat_mastadenovirus_WIV9

TaxID: 1788436

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 209-303

PDB

Domain cluster: rep: 52k_protein__YP_009361327__Cynomolgus_adenovirus_1__507488__D244-333

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03052.21 best	Adeno_52K	25.9	9.00e-06	35.8%	16.4%

D2 medium residues 69-175

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03052.21 best	Adeno_52K	134.0	6.90e-39	100.0%	52.2%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ofnY00	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.57	46.0	4.50e-01	86.0%	83.5%
3zeuB02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.53	37.0	3.16e-01	71.0%	77.6%
1ox3A00	1.20.5.320	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 6-Phosphogluconate Dehydrogenase, domain 3	0.53	41.0	4.16e-01	93.5%	80.6%
3ifrB02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.51	36.0	2.76e-01	72.9%	61.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3419529	170.2.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain	0.66	34.0	3.76e-01	86.0%	60.0%
4243447	2003.1.5.95 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM13	0.66	46.0	3.22e-01	72.0%	81.4%
3231223	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.60	55.0	4.59e-01	99.1%	86.1%
3194755	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.59	47.0	2.82e-01	83.2%	28.2%
3988581	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.56	38.0	4.14e-01	78.5%	82.2%
3870915	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.56	46.0	3.73e-01	86.9%	53.5%
3730196	150.5.1.59 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › FTA4	0.55	34.0	3.51e-01	94.4%	62.9%
4503486	2003.1.5.95 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM13	0.54	40.0	2.82e-01	77.6%	78.9%
3585587	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.54	44.0	3.66e-01	90.7%	64.6%
3425929	606.1.1.0 ↗	alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain	0.53	41.0	3.99e-01	83.2%	87.5%
380466	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.50	25.0	2.98e-01	94.4%	70.4%