←Back to structures

52K_protein

Euk-Vir

Bovine_atadenovirus_D

52K_protein__NP_077391__Bovine_atadenovirus_D__130499

Identity

Accession:
NP_077391 ↗
Protein ID:
52K_protein
Kingdom:
euk

Quality

74.6 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Barthadenovirus› Bovine_atadenovirus_D

TaxID: 130499

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 77-138
PDB
Domain cluster: rep: 52_kDa_protein__YP_004346923__Fowl_aviadenovirus_C__190063__D135-188
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03052.21 best Adeno_52K 81.0 1.20e-22 100.0% 30.3%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 54.0 5.18e-01 82.3% 73.2%
3uuxB01 6.10.280.220 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 59.0 4.87e-01 95.2% 58.2%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 53.0 4.21e-01 82.3% 46.2%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 47.0 3.66e-01 72.6% 59.8%
1ox3A00 1.20.5.320 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 6-Phosphogluconate Dehydrogenase, domain 3 0.64 46.0 3.88e-01 77.4% 55.6%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.63 55.0 4.48e-01 96.8% 62.8%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 36.0 3.53e-01 80.6% 54.4%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.60 37.0 3.84e-01 91.9% 66.1%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.60 48.0 3.99e-01 87.1% 52.3%
4f7aA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 54.0 3.16e-01 100.0% 15.3%
3on5B02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 42.0 3.08e-01 72.6% 98.7%
3i5tB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 43.0 3.10e-01 75.8% 75.0%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 51.0 4.52e-01 98.4% 75.8%
4linD01 1.20.5.340 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 47.0 3.57e-01 87.1% 42.4%
4flaC00 6.10.250.2560 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 52.0 4.11e-01 100.0% 50.4%
3vkhB01 1.10.287.2620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 45.0 4.50e-01 83.9% 93.8%
7dwqL01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.57 49.0 3.93e-01 96.8% 78.4%
5fj8A06 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.55 48.0 3.57e-01 100.0% 40.1%
4at7B01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.55 46.0 3.56e-01 91.9% 85.7%
2fekA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 46.0 3.48e-01 95.2% 97.3%
3kraC00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 45.0 2.92e-01 95.2% 55.4%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.53 39.0 3.97e-01 83.9% 80.3%
3nrtA00 6.20.350.10 Special › Other non-globular › Actin; Chain A, domain 4 › 0.53 41.0 3.57e-01 82.3% 80.6%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 45.0 3.70e-01 95.2% 89.2%
2wh5A00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.51 42.0 3.68e-01 87.1% 76.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3202986 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 56.0 4.37e-01 82.3% 97.6%
3391384 5030.1.1.0 ↗ extended segments › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL 0.69 54.0 4.84e-01 83.9% 89.4%
4115648 3671.1.1.1 ↗ alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Tir_receptor_M 0.68 49.0 4.32e-01 74.2% 100.0%
3192059 105.1.1.5 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › bZIP_2 0.68 56.0 4.60e-01 98.4% 50.0%
4027404 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.68 57.0 4.93e-01 93.5% 70.5%
3716174 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 51.0 4.17e-01 82.3% 62.7%
4953123 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.66 51.0 3.02e-01 82.3% 15.4%
3567972 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 49.0 3.80e-01 82.3% 52.1%
3172733 630.1.1.4 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF28952 0.65 57.0 4.33e-01 96.8% 67.9%
4019323 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.65 53.0 4.41e-01 88.7% 54.3%
4073860 5086.1.1.67 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Neurensin 0.64 55.0 4.20e-01 91.9% 63.0%
3786162 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 55.0 4.73e-01 93.5% 73.7%
3595409 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 58.0 4.17e-01 100.0% 77.6%
3478716 4156.1.1.1 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 0.64 47.0 3.50e-01 77.4% 56.7%
3239087 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.64 55.0 4.43e-01 93.5% 60.0%
None — 0.63 52.0 3.27e-01 88.7% 20.3%
2526355 7094.1.1.2 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 0.63 55.0 4.68e-01 100.0% 80.0%
3741919 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 54.0 4.57e-01 93.5% 70.0%
4020966 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 54.0 4.33e-01 93.5% 75.7%
4984959 3758.1.1.113 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook 0.62 54.0 3.35e-01 93.5% 23.3%
3516337 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.62 52.0 4.24e-01 93.5% 50.9%
3522705 109.4.1.839 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.61 46.0 3.22e-01 80.6% 35.6%
3505438 604.1.1.67 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_5 0.61 55.0 4.63e-01 98.4% 82.0%
3610113 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.61 54.0 3.26e-01 98.4% 34.1%
4096488 3291.1.1.52 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Neurensin 0.60 56.0 4.28e-01 100.0% 63.1%
3727652 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 54.0 4.32e-01 98.4% 73.9%
3947242 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.59 53.0 3.27e-01 100.0% 31.3%
3578256 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.59 50.0 4.79e-01 100.0% 81.4%
3445936 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.59 52.0 3.90e-01 100.0% 53.5%
3449928 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.58 45.0 4.34e-01 82.3% 80.0%
3414133 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.58 52.0 4.15e-01 100.0% 93.6%
3639694 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 53.0 3.24e-01 100.0% 35.7%
4072756 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.58 53.0 3.49e-01 100.0% 50.4%
5029796 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 49.0 3.95e-01 93.5% 52.5%
3631616 109.4.1.509 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.57 48.0 3.24e-01 95.2% 52.2%
3701212 630.1.1.1 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.57 51.0 3.67e-01 100.0% 54.9%
3771409 109.4.1.839 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.56 48.0 3.39e-01 95.2% 60.0%
3822661 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.55 49.0 3.43e-01 100.0% 31.9%
4999570 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 3.98e-01 93.5% 65.6%
4887928 5063.1.1.1 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.51 42.0 4.07e-01 91.9% 88.6%
D2 medium residues 177-202_251-288
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 54.0 4.57e-01 98.4% 66.0%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.59 49.0 5.07e-01 92.2% 100.0%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.59 43.0 4.25e-01 79.7% 72.9%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 47.0 3.66e-01 100.0% 42.1%
2dkxA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 45.0 3.98e-01 87.5% 100.0%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.57 49.0 3.12e-01 96.9% 19.2%
1szhA01 1.10.150.360 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 44.0 4.43e-01 98.4% 89.2%
3crvA02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.50 45.0 3.77e-01 100.0% 67.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3497251 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.66 54.0 5.05e-01 96.9% 71.2%
4114337 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.65 49.0 4.63e-01 93.8% 68.0%
5041914 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.64 57.0 3.55e-01 98.4% 100.0%
3258290 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.64 49.0 4.66e-01 100.0% 69.3%
5046473 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.64 44.0 3.92e-01 71.9% 54.4%
3928911 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 49.0 4.82e-01 85.9% 92.9%
3282529 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.62 56.0 4.74e-01 100.0% 63.8%
3530734 605.3.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain 0.58 49.0 4.69e-01 93.8% 84.0%
3787531 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.57 44.0 4.06e-01 96.9% 66.3%
3394510 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.56 42.0 3.94e-01 95.3% 65.0%
3932008 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 46.0 4.38e-01 92.2% 78.7%
4309144 110.1.1.12 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › RECK-like_N 0.52 36.0 3.88e-01 98.4% 85.5%
3245000 4338.1.1.0 ↗ alpha complex topology › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like 0.52 45.0 4.13e-01 100.0% 82.4%
3407630 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.50 42.0 4.35e-01 100.0% 100.0%