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52_kDa_protein
Euk-VirFowl_aviadenovirus_C
52_kDa_protein__YP_004346923__Fowl_aviadenovirus_C__190063
Identity
- Accession:
- YP_004346923 ↗
- Protein ID:
- 52_kDa_protein
- Kingdom:
- euk
Quality
70.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Fowl_aviadenovirus_C
TaxID: 190063
Cluster
View cluster (43 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 135-188
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03052.21 best | Adeno_52K | 60.2 | 2.80e-16 | 100.0% | 25.9% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oxjA02 | 1.25.40.170 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain | 0.62 | 50.0 | 4.00e-01 | 90.7% | 47.7% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 47.0 | 4.18e-01 | 83.3% | 64.5% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 44.0 | 3.44e-01 | 79.6% | 37.8% |
| 1i24A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.59 | 41.0 | 3.12e-01 | 75.9% | 32.4% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 45.0 | 2.69e-01 | 85.2% | 22.9% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 45.0 | 3.63e-01 | 90.7% | 87.5% |
| 2wg7A00 | 1.20.90.10 | Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain | 0.53 | 44.0 | 3.41e-01 | 92.6% | 42.1% |
| 2p0wA03 | 1.10.10.390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 39.0 | 3.94e-01 | 96.3% | 85.2% |
| 6x50A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.88e-01 | 100.0% | 98.1% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 37.0 | 2.91e-01 | 79.6% | 67.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4933701 | 3928.1.1.0 ↗ | alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA | 0.64 | 45.0 | 4.00e-01 | 74.1% | 97.3% |
| 3192059 | 105.1.1.5 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › bZIP_2 | 0.60 | 44.0 | 3.54e-01 | 79.6% | 42.7% |
| 3605561 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 45.0 | 3.14e-01 | 79.6% | 41.8% |
| 3988581 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 43.0 | 3.64e-01 | 79.6% | 97.8% |
| 3204205 | 109.17.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › Proteasome activator BLM10 › Proteasome activator BLM10 › PSME4_C, HEAT_PSME4_mid, BLM10_N, HEAT_PSME4 | 0.56 | 47.0 | 2.47e-01 | 96.3% | 72.7% |
| 3475687 | 109.4.1.156 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC45-central | 0.54 | 45.0 | 2.46e-01 | 100.0% | 5.5% |
| 4943088 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.54 | 44.0 | 3.28e-01 | 94.4% | 92.7% |
| 3595409 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 47.0 | 3.32e-01 | 100.0% | 33.5% |
| 3741919 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 43.0 | 3.52e-01 | 90.7% | 99.0% |
| 3782049 | 4177.1.1.27 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 | 0.52 | 45.0 | 2.82e-01 | 94.4% | 22.9% |
| 3516337 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.52 | 41.0 | 3.22e-01 | 85.2% | 44.5% |
| 4079746 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.51 | 41.0 | 3.31e-01 | 98.1% | 95.4% |
| 3631951 | 3755.3.1.355 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 | 0.51 | 45.0 | 3.36e-01 | 100.0% | 87.9% |
| 3924495 | 109.4.1.587 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C | 0.51 | 39.0 | 2.48e-01 | 90.7% | 19.4% |
| 3234040 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.50 | 42.0 | 3.02e-01 | 92.6% | 32.9% |
D2
high
residues 193-342
Domain cluster:
rep: encapsidation_protein_52K__YP_009505657__Fowl_aviadenovirus_6__172862__D198-348
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03052.21 best | Adeno_52K | 123.1 | 1.50e-35 | 68.0% | 50.7% |