←Back to structures

52k_protein

Euk-Vir

Cynomolgus_adenovirus_1

52k_protein__YP_009361327__Cynomolgus_adenovirus_1__507488

Identity

Accession:
YP_009361327 ↗
Protein ID:
52k_protein
Kingdom:
euk

Quality

71.7 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Cynomolgus_adenovirus_1

TaxID: 507488

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 244-333
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03052.21 best Adeno_52K 29.1 9.50e-07 37.8% 16.4%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.73 56.0 5.88e-01 86.7% 90.1%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 43.0 4.63e-01 94.4% 70.1%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.70 39.0 4.70e-01 96.7% 82.0%
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.69 48.0 4.62e-01 83.3% 64.0%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.69 50.0 4.15e-01 82.2% 43.1%
2k0nA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.68 42.0 4.29e-01 71.1% 64.7%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 48.0 4.43e-01 76.7% 64.3%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.64 45.0 4.38e-01 72.2% 67.0%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.62 50.0 5.01e-01 86.7% 85.9%
7lv8A01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 44.0 4.56e-01 75.6% 85.7%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.62 42.0 3.66e-01 70.0% 87.5%
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 50.0 4.16e-01 88.9% 62.7%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 36.0 4.23e-01 90.0% 85.5%
2of7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 51.0 4.45e-01 94.4% 67.1%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 43.0 3.86e-01 75.6% 93.1%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 44.0 4.00e-01 78.9% 78.1%
2rekA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 48.0 3.87e-01 85.6% 65.1%
2fji102 1.10.357.70 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain 0.60 52.0 4.06e-01 95.6% 81.6%
3ismC01 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.59 44.0 3.66e-01 77.8% 46.8%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 44.0 4.11e-01 77.8% 84.5%
2wiyA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 51.0 3.40e-01 100.0% 69.3%
7f16R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 45.0 3.22e-01 84.4% 75.8%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 49.0 3.31e-01 98.9% 67.3%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 46.0 3.17e-01 88.9% 77.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 39.0 4.12e-01 87.8% 82.3%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 47.0 3.16e-01 100.0% 68.0%
6humG01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.55 40.0 3.34e-01 76.7% 69.4%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.55 41.0 3.17e-01 80.0% 36.2%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.55 37.0 3.62e-01 76.7% 61.2%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 45.0 3.56e-01 86.7% 64.9%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 41.0 3.47e-01 81.1% 74.2%
3ejnA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.54 40.0 3.80e-01 80.0% 65.8%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.54 41.0 3.74e-01 82.2% 93.5%
1m56C02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.53 42.0 3.32e-01 84.4% 62.8%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 44.0 4.41e-01 90.0% 87.9%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 39.0 3.99e-01 77.8% 81.6%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 43.0 4.11e-01 90.0% 85.4%
2r44A03 1.10.8.80 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain 0.51 36.0 3.35e-01 74.4% 71.2%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.51 39.0 3.76e-01 82.2% 83.3%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.50 39.0 3.22e-01 83.3% 79.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4611743 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.76 60.0 6.01e-01 90.0% 83.3%
4029677 3291.1.1.219 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF30356 0.72 58.0 4.87e-01 88.9% 65.8%
3279933 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.71 59.0 5.00e-01 88.9% 69.4%
3347379 3470.1.1.26 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.71 42.0 4.83e-01 74.4% 81.5%
5001293 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.70 57.0 3.88e-01 87.8% 57.8%
3960608 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.69 58.0 5.11e-01 91.1% 69.2%
3927006 603.1.1.99 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.69 42.0 4.30e-01 94.4% 62.2%
3930048 627.1.1.1 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.67 49.0 4.11e-01 82.2% 43.8%
3609099 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.67 40.0 4.09e-01 91.1% 61.1%
3723517 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.66 37.0 3.84e-01 88.9% 58.8%
3807513 633.4.1.0 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.65 49.0 4.28e-01 80.0% 94.1%
4262617 5061.1.1.1 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.64 57.0 3.85e-01 100.0% 71.8%
4942740 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.64 44.0 3.93e-01 71.1% 52.0%
3248743 3277.2.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.62 41.0 4.10e-01 85.6% 65.3%
4823577 3286.1.1.1 ↗ alpha complex topology › Glypican insertion domain › Glypican insertion domain › Glypican insertion domain › Glypican 0.62 42.0 4.53e-01 71.1% 89.7%
4999330 604.12.1.135 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 0.61 50.0 4.87e-01 87.8% 85.0%
4007927 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.61 51.0 3.50e-01 91.1% 55.2%
4502288 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.59 50.0 4.85e-01 95.6% 88.0%
3229748 1134.1.1.9 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 0.59 41.0 4.28e-01 92.2% 76.5%
3404270 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 44.0 3.90e-01 81.1% 54.6%
5016489 604.39.1.9 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 0.59 51.0 3.99e-01 97.8% 92.5%
3220978 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.58 47.0 3.72e-01 90.0% 54.3%
5044572 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.58 50.0 4.78e-01 94.4% 95.2%
4189329 6026.1.1.36 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › AlaE 0.58 50.0 4.50e-01 98.9% 71.5%
3714869 3543.1.1.0 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel 0.58 41.0 3.11e-01 72.2% 66.5%
4933188 5069.1.3.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.58 44.0 4.33e-01 80.0% 92.6%
3253260 5069.1.3.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS 0.57 44.0 4.17e-01 82.2% 77.1%
3215435 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.57 47.0 4.00e-01 90.0% 66.2%
4457636 604.12.1.77 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PMEI 0.57 41.0 4.08e-01 75.6% 78.9%
5064630 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.56 45.0 3.53e-01 87.8% 71.5%
4175653 5069.1.3.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS 0.56 44.0 4.01e-01 83.3% 69.7%
4933264 5060.1.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.56 46.0 4.18e-01 88.9% 82.5%
4058767 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.56 40.0 3.42e-01 73.3% 67.9%
3252293 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.55 44.0 3.03e-01 86.7% 31.4%
3574818 616.1.1.1 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.54 44.0 3.71e-01 88.9% 61.3%
3624216 616.1.1.22 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › PF28936 0.54 45.0 3.42e-01 92.2% 96.0%
3772121 632.7.1.19 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever 0.54 44.0 4.48e-01 87.8% 87.8%
4201688 3843.1.1.1 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.53 44.0 4.33e-01 90.0% 86.3%
4983939 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 47.0 4.04e-01 100.0% 97.2%
3783874 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.52 45.0 3.49e-01 95.6% 45.0%
5074225 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.52 45.0 4.52e-01 92.2% 93.3%
4367857 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 45.0 3.21e-01 95.6% 69.5%
3472795 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 44.0 3.88e-01 92.2% 64.6%
3596205 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 42.0 4.15e-01 87.8% 96.8%
3995816 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 35.0 3.58e-01 73.3% 72.9%
3912101 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.51 43.0 4.14e-01 90.0% 82.0%
4105691 603.1.1.108 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27599 0.50 45.0 3.43e-01 96.7% 50.5%
5007869 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.50 42.0 4.07e-01 95.6% 81.0%
D2 medium residues 103-205
PDB
Domain cluster: rep: 52K__YP_009162349__Equine_adenovirus_2__67603__D61-138
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03052.21 best Adeno_52K 126.6 1.30e-36 100.0% 48.8%