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53_kDa_protein
Euk-VirGrapevine_leafroll-associated_virus_13
53_kDa_protein__YP_009241369__Grapevine_leafroll-associated_virus_13__1815581
Identity
- Accession:
- YP_009241369 ↗
- Protein ID:
- 53_kDa_protein
- Kingdom:
- euk
Quality
55.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Ampelovirus›
Grapevine_leafroll-associated_virus_13
TaxID: 1815581
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 187-288
D2
high
residues 297-467
Domain cluster:
rep: Hsp90__YP_010086803__Pistachio_ampelovirus_A__2093224__D326-483
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 29.0 | 4.02e-01 | 70.8% | 86.7% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 31.0 | 3.79e-01 | 74.9% | 81.1% |
| 1px5A02 | 1.10.1410.20 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 2'-5'-oligoadenylate synthetase 1, domain 2 | 0.54 | 38.0 | 3.71e-01 | 71.9% | 65.6% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 27.0 | 3.55e-01 | 75.4% | 92.6% |
| 1ed1A00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.51 | 34.0 | 4.01e-01 | 82.5% | 99.1% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 26.0 | 3.49e-01 | 86.5% | 95.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596092 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 26.0 | 3.31e-01 | 88.9% | 73.3% |
| 4390110 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.57 | 40.0 | 3.50e-01 | 70.8% | 89.3% |
| 4983405 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 26.0 | 2.74e-01 | 88.3% | 47.9% |