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55_kDa_replicase

Euk-Vir

Maracuja_mosaic_virus

55_kDa_replicase__YP_950422__Maracuja_mosaic_virus__368736

Identity

Accession:: YP_950422 ↗
Protein ID:: 55_kDa_replicase
Kingdom:: euk

Quality

83.3 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Virgaviridae› Tobamovirus› Maracuja_mosaic_virus

TaxID: 368736

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 399-479

PDB

Domain cluster: rep: RdRp__YP_009388601__Aedes_camptorhynchus_negev-like_virus_Viruses.__X__D397-476

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	47.6	1.70e-12	97.5%	17.9%

CATH (30)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	48.0	4.78e-01	100.0%	78.8%
2b8iA00	1.20.1280.100	Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain	0.63	42.0	4.33e-01	100.0%	72.7%
3oxfA05	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	42.0	4.36e-01	95.1%	74.7%
6t0bf00	1.25.40.40	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI	0.61	39.0	3.64e-01	100.0%	51.0%
7c1iA01	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.58	43.0	4.03e-01	100.0%	64.0%
1u5pA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	49.0	4.54e-01	100.0%	87.0%
3pe0A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	47.0	4.47e-01	100.0%	91.1%
3zheA02	1.25.40.760	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	45.0	3.39e-01	91.4%	36.2%
5j1hA01	1.20.58.1060	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	45.0	3.58e-01	100.0%	42.3%
2rpaA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.55	41.0	4.17e-01	91.4%	84.4%
2dodA00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.54	36.0	3.63e-01	91.4%	67.1%
2ze7A02	1.10.287.890	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain	0.54	41.0	3.85e-01	81.5%	90.2%
4mbsA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.54	45.0	3.01e-01	93.8%	82.1%
3c8zA02	1.20.120.640	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0.54	37.0	3.75e-01	93.8%	71.1%
2g38B00	1.20.1260.20	Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily	0.54	41.0	3.28e-01	84.0%	86.7%
1br0A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	45.0	4.00e-01	96.3%	85.8%
5dvwA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.53	42.0	3.68e-01	88.9%	59.8%
2katA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	33.0	3.00e-01	93.8%	42.6%
7ccmB01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.52	40.0	3.31e-01	87.7%	46.2%
3emlA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	43.0	3.10e-01	98.8%	76.0%
1xl3C00	1.20.1280.80	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.52	43.0	4.16e-01	97.5%	82.4%
2a9uA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.52	41.0	3.63e-01	95.1%	57.9%
5t3wA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.51	44.0	3.74e-01	97.5%	56.9%
2gs4A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	38.0	3.14e-01	80.2%	82.3%
5h5mA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	43.0	3.79e-01	98.8%	90.8%
3x29A00	1.20.140.150	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.51	43.0	3.47e-01	96.3%	57.8%
3bemB00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.51	36.0	2.74e-01	74.1%	65.6%
3sfvB02	6.10.140.2010	Special › Helix non-globular › Helix Hairpins ›	0.51	39.0	2.98e-01	84.0%	96.5%
3k01A02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.50	42.0	3.34e-01	100.0%	87.8%
3zbhA00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.50	34.0	3.34e-01	70.4%	73.3%

ECOD (25)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3669460	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.60	41.0	4.12e-01	97.5%	68.2%
3411668	604.12.1.1 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT	0.59	42.0	4.37e-01	93.8%	81.3%
3461675	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.59	38.0	3.35e-01	95.1%	43.3%
4994837	3651.1.1.0 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain	0.58	39.0	3.83e-01	97.5%	63.3%
3912433	603.1.1.5 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N	0.57	48.0	4.10e-01	93.8%	74.8%
3253152	198.1.1.3 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1	0.57	40.0	3.86e-01	100.0%	64.4%
3375214	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.57	36.0	2.98e-01	95.1%	34.0%
3756535	604.1.1.5 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3	0.57	49.0	4.46e-01	100.0%	79.1%
3520738	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.56	42.0	3.44e-01	80.2%	47.7%
3826382	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.56	37.0	3.34e-01	95.1%	45.8%
3755128	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.56	48.0	4.60e-01	96.3%	88.4%
3484674	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	49.0	3.91e-01	100.0%	89.1%
3655114	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	42.0	3.59e-01	92.6%	48.6%
3898383	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	46.0	4.11e-01	96.3%	74.4%
3192800	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.55	47.0	3.47e-01	97.5%	74.3%
3580104	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	46.0	4.42e-01	95.1%	92.6%
3581262	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	47.0	4.59e-01	100.0%	94.4%
5016973	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.54	38.0	3.77e-01	96.3%	69.4%
3738041	192.5.1.1 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1	0.54	40.0	4.00e-01	79.0%	91.8%
3855973	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.54	46.0	4.39e-01	100.0%	92.0%
2605083	3432.1.1.1 ↗	alpha bundles › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Transcript_VP30	0.53	43.0	3.76e-01	90.1%	61.2%
5041952	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.53	46.0	3.95e-01	100.0%	68.1%
1888148	3432.1.1.1 ↗	alpha bundles › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Transcript_VP30	0.53	42.0	3.61e-01	88.9%	56.8%
3666393	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.53	43.0	4.14e-01	90.1%	83.2%
5070736	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.51	36.0	2.76e-01	77.8%	30.5%

D2 medium residues 1-63

PDB

D3 medium residues 64-246_309-328_386-398

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	145.8	2.70e-42	84.7%	38.4%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4937067	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.70	49.0	4.57e-01	71.3%	100.0%
5029718	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.68	50.0	4.22e-01	73.6%	96.8%
3918122	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.67	62.0	5.06e-01	99.5%	98.0%
3792091	304.48.1.25 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4	0.59	46.0	3.89e-01	80.6%	77.4%
3097450	304.48.1.12 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol	0.58	49.0	3.97e-01	89.4%	87.8%

D4 medium residues 329-382

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	36.0	5.50e-09	98.2%	10.7%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5zneA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.62	49.0	4.60e-01	96.3%	74.0%
1g8mA02	3.40.140.20	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain	0.59	43.0	3.09e-01	81.5%	67.0%
4uwmA00	3.20.20.30	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain	0.57	40.0	2.53e-01	77.8%	49.2%
2kt2A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.57	45.0	4.27e-01	100.0%	73.9%
4ijaA03	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.55	38.0	2.93e-01	74.1%	94.0%
1i7qA00	3.60.120.10	Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase	0.55	44.0	2.63e-01	96.3%	82.8%
7uvpA02	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.54	43.0	4.00e-01	88.9%	72.5%
2zueA01	3.30.1360.70	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain	0.53	40.0	3.38e-01	92.6%	66.1%
2pb2B01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.52	43.0	3.29e-01	98.1%	40.8%
5fclE01	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.51	41.0	3.65e-01	100.0%	67.8%
2yfqB03	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.51	35.0	2.75e-01	77.8%	79.3%

ECOD (37)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3675128	304.9.1.20 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8	0.69	57.0	5.35e-01	96.3%	87.1%
3971560	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.69	57.0	5.40e-01	94.4%	83.1%
4528041	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.65	54.0	5.32e-01	98.1%	86.7%
5062182	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.63	52.0	4.98e-01	98.1%	81.5%
4948608	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.63	48.0	4.68e-01	98.1%	75.4%
5077017	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.63	50.0	4.54e-01	94.4%	66.3%
4997843	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.63	50.0	5.22e-01	94.4%	98.0%
5066439	304.3.1.14 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C	0.63	53.0	5.04e-01	98.1%	84.6%
5063713	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.63	51.0	5.00e-01	94.4%	86.7%
4959707	304.120.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI	0.62	49.0	4.74e-01	92.6%	76.9%
5047912	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.62	48.0	4.61e-01	94.4%	75.4%
5026067	310.1.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	0.62	48.0	4.03e-01	92.6%	61.9%
4940220	304.163.1.0 ↗	a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain	0.61	47.0	4.67e-01	90.7%	83.3%
4973375	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.61	49.0	3.13e-01	94.4%	17.2%
3301018	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.61	49.0	4.90e-01	98.1%	96.4%
4960707	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.61	50.0	4.80e-01	96.3%	83.1%
5077572	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.60	46.0	4.21e-01	94.4%	62.7%
5018894	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.60	48.0	4.64e-01	100.0%	80.0%
2390536	4014.1.1.1 ↗	a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV	0.59	44.0	3.33e-01	87.0%	34.0%
3230011	6106.1.1.0 ↗	extended segments › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY › Photosystem II protein Y, psbY	0.59	42.0	3.72e-01	77.8%	55.3%
3589856	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.59	45.0	4.40e-01	90.7%	75.4%
5057057	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.59	45.0	3.97e-01	88.9%	63.3%
4936518	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.59	48.0	4.39e-01	96.3%	69.3%
5046840	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.58	48.0	4.19e-01	98.1%	58.9%
3332869	304.3.1.1 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA	0.58	45.0	4.64e-01	96.3%	100.0%
3998667	4014.1.1.1 ↗	a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV	0.58	43.0	3.06e-01	87.0%	30.8%
3405980	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.57	31.0	3.47e-01	85.2%	67.5%
3786964	101.1.10.1 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N	0.57	45.0	3.30e-01	98.1%	47.6%
3836283	304.3.1.1 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA	0.56	44.0	4.23e-01	92.6%	76.9%
3714022	304.24.1.3 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III	0.56	45.0	4.44e-01	98.1%	85.0%
4973562	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.56	44.0	4.29e-01	98.1%	78.5%
4963959	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.55	44.0	3.93e-01	94.4%	60.0%
3601388	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.55	46.0	4.19e-01	98.1%	70.7%
3164240	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.53	41.0	3.88e-01	92.6%	74.3%
3989505	6051.5.1.0 ↗	alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain	0.52	35.0	3.69e-01	74.1%	97.8%
5020250	102.1.4.2 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › Nop C-terminal domain › Transposase_20	0.52	39.0	2.97e-01	87.0%	47.0%
5041529	284.1.1.0 ↗	a+b two layers › FKBP-like › FKBP-like › FKBP-like	0.52	35.0	2.91e-01	74.1%	85.8%