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5H_04062016_scaffold_1_prodigal-single.1__X__X__00003
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00003
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-71
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 47.0 | 5.23e-01 | 94.0% | 96.1% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 45.0 | 5.06e-01 | 91.0% | 92.0% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 52.0 | 5.48e-01 | 100.0% | 98.3% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 50.0 | 4.95e-01 | 95.5% | 76.1% |
| 2e6zA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 5.15e-01 | 100.0% | 91.5% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 4.97e-01 | 88.1% | 86.2% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.65 | 50.0 | 4.81e-01 | 100.0% | 72.7% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 36.0 | 3.89e-01 | 97.0% | 63.8% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.64 | 45.0 | 4.79e-01 | 89.6% | 84.7% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.64 | 44.0 | 4.43e-01 | 89.6% | 72.7% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.64 | 55.0 | 5.22e-01 | 97.0% | 92.4% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 48.0 | 4.25e-01 | 98.5% | 55.0% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 48.0 | 4.88e-01 | 100.0% | 86.4% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.64 | 54.0 | 5.28e-01 | 97.0% | 97.3% |
| 2hg6A00 | 3.90.1650.10 | Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like | 0.63 | 32.0 | 2.72e-01 | 86.6% | 30.2% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 44.0 | 4.74e-01 | 94.0% | 89.3% |
| 2xfmA00 | 2.170.260.10 | Mainly Beta › Beta Complex › paz domain › paz domain | 0.63 | 55.0 | 4.58e-01 | 100.0% | 92.5% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 45.0 | 4.96e-01 | 98.5% | 100.0% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 45.0 | 4.26e-01 | 98.5% | 65.0% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.54e-01 | 100.0% | 75.3% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 48.0 | 5.03e-01 | 92.5% | 93.5% |
| 2e6nA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.04e-01 | 100.0% | 52.9% |
| 1ljoA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 53.0 | 5.20e-01 | 100.0% | 89.3% |
| 3ic8A01 | 3.40.30.110 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.61 | 48.0 | 3.64e-01 | 100.0% | 33.3% |
| 7w0aA02 | 2.170.260.10 | Mainly Beta › Beta Complex › paz domain › paz domain | 0.61 | 53.0 | 4.36e-01 | 98.5% | 87.2% |
| 4ii1A01 | 2.30.30.1190 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 4.85e-01 | 94.0% | 97.5% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.57e-01 | 89.6% | 92.7% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 5.14e-01 | 98.5% | 95.6% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.60 | 47.0 | 4.60e-01 | 100.0% | 77.9% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 4.54e-01 | 92.5% | 96.2% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 47.0 | 4.17e-01 | 98.5% | 59.4% |
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 50.0 | 5.03e-01 | 95.5% | 98.6% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 48.0 | 4.95e-01 | 100.0% | 98.4% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 44.0 | 4.52e-01 | 97.0% | 91.9% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.58 | 42.0 | 4.50e-01 | 88.1% | 94.4% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 49.0 | 4.82e-01 | 100.0% | 91.8% |
| 6uy8A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 46.0 | 4.87e-01 | 91.0% | 100.0% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 49.0 | 4.66e-01 | 100.0% | 93.8% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 42.0 | 4.24e-01 | 86.6% | 83.8% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 44.0 | 4.05e-01 | 100.0% | 68.5% |
| 4fgoA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.53 | 40.0 | 2.99e-01 | 91.0% | 30.9% |
| 2h5eA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 3.18e-01 | 100.0% | 35.4% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 43.0 | 3.69e-01 | 98.5% | 98.3% |
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.51 | 28.0 | 3.12e-01 | 91.0% | 67.4% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.51 | 42.0 | 3.83e-01 | 94.0% | 92.4% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 41.0 | 3.28e-01 | 97.0% | 83.6% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031509 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 56.0 | 5.92e-01 | 100.0% | 95.0% |
| 3684567 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.71 | 52.0 | 5.26e-01 | 97.0% | 80.0% |
| 3931993 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 5.54e-01 | 98.5% | 90.0% |
| 4953054 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 52.0 | 5.03e-01 | 100.0% | 72.0% |
| 4985969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 52.0 | 5.42e-01 | 100.0% | 90.0% |
| 4957888 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.69 | 53.0 | 5.56e-01 | 100.0% | 91.7% |
| 5004050 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 51.0 | 5.10e-01 | 100.0% | 75.7% |
| 3663761 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 51.0 | 4.37e-01 | 97.0% | 49.5% |
| 3583597 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 54.0 | 4.90e-01 | 100.0% | 63.3% |
| 3304627 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.69 | 52.0 | 5.60e-01 | 97.0% | 98.2% |
| 4974669 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.69 | 52.0 | 4.76e-01 | 100.0% | 61.1% |
| 5065747 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.69 | 52.0 | 4.76e-01 | 97.0% | 61.1% |
| 3828348 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 5.14e-01 | 98.5% | 81.5% |
| 3452043 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 4.01e-01 | 100.0% | 39.3% |
| 3811611 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 51.0 | 4.92e-01 | 98.5% | 70.7% |
| 3830763 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.68 | 49.0 | 4.66e-01 | 98.5% | 65.0% |
| 4589595 | 4.1.1.447 ↗ | beta barrels › SH3 › SH3 › SH3 › PF28065 | 0.67 | 54.0 | 5.47e-01 | 100.0% | 92.3% |
| 4559371 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 53.0 | 5.42e-01 | 100.0% | 93.7% |
| 3313119 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.66 | 49.0 | 4.64e-01 | 98.5% | 66.3% |
| 3591224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 46.0 | 5.13e-01 | 89.6% | 100.0% |
| 3533318 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.66 | 44.0 | 4.92e-01 | 91.0% | 94.0% |
| 3581143 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.66 | 47.0 | 4.82e-01 | 97.0% | 80.0% |
| 3801791 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 5.00e-01 | 100.0% | 83.1% |
| 3881111 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.66 | 48.0 | 4.40e-01 | 100.0% | 58.9% |
| 3881121 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 48.0 | 4.24e-01 | 98.5% | 53.0% |
| 3815479 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 49.0 | 4.74e-01 | 100.0% | 72.0% |
| 3547102 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 48.0 | 4.52e-01 | 100.0% | 63.5% |
| 3308604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.65 | 51.0 | 4.94e-01 | 100.0% | 77.3% |
| 3818309 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.64 | 57.0 | 4.61e-01 | 100.0% | 84.6% |
| 4388256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 56.0 | 4.60e-01 | 100.0% | 91.2% |
| 3547093 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 47.0 | 4.30e-01 | 98.5% | 60.0% |
| 1263713 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.63 | 45.0 | 4.90e-01 | 100.0% | 98.1% |
| 3936926 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 48.0 | 4.95e-01 | 98.5% | 87.7% |
| 3672445 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 4.23e-01 | 100.0% | 53.8% |
| 5058457 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.62 | 49.0 | 5.00e-01 | 100.0% | 93.8% |
| 3924850 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.62 | 55.0 | 4.51e-01 | 100.0% | 93.6% |
| 5020252 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 50.0 | 4.21e-01 | 100.0% | 50.8% |
| 4642857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 5.09e-01 | 100.0% | 91.3% |
| 3883165 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 45.0 | 4.06e-01 | 98.5% | 54.0% |
| 3684646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 46.0 | 4.39e-01 | 100.0% | 68.8% |
| 5027750 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 42.0 | 4.48e-01 | 88.1% | 87.3% |
| 3274551 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 45.0 | 4.44e-01 | 98.5% | 73.3% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.61 | 51.0 | 5.07e-01 | 100.0% | 92.8% |
| 3558926 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 44.0 | 4.14e-01 | 97.0% | 60.0% |
| 4221708 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.61 | 49.0 | 4.86e-01 | 100.0% | 87.1% |
| 3596676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 45.0 | 4.17e-01 | 98.5% | 61.1% |
| 4990442 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.60 | 52.0 | 4.92e-01 | 100.0% | 85.0% |
| 3497234 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 49.0 | 3.71e-01 | 100.0% | 37.6% |
| 3593793 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.58 | 33.0 | 3.66e-01 | 94.0% | 72.0% |
| 3896701 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 45.0 | 4.12e-01 | 86.6% | 65.6% |
| 3495148 | 219.1.1.41 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 | 0.57 | 49.0 | 3.76e-01 | 100.0% | 50.3% |
| 3710540 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 48.0 | 4.73e-01 | 100.0% | 98.7% |
| 3710893 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 49.0 | 3.97e-01 | 100.0% | 63.1% |
| 4026193 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.30e-01 | 94.0% | 96.5% |
| 3707929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 47.0 | 3.66e-01 | 100.0% | 51.9% |
| 3600929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 47.0 | 4.38e-01 | 100.0% | 87.1% |
| 3472024 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.53 | 31.0 | 3.41e-01 | 100.0% | 70.9% |
| 4995921 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.52 | 43.0 | 3.44e-01 | 100.0% | 45.0% |
| 1323187 | 219.1.1.38 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C93 | 0.51 | 39.0 | 2.90e-01 | 91.0% | 30.9% |
| 4600912 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 43.0 | 3.48e-01 | 100.0% | 48.5% |
| 5048764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 42.0 | 3.35e-01 | 100.0% | 44.3% |
| 3253743 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.50 | 42.0 | 3.45e-01 | 100.0% | 50.4% |
| 4012780 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 42.0 | 3.37e-01 | 100.0% | 46.7% |
| 3629315 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 39.0 | 2.97e-01 | 91.0% | 61.1% |
| 4526935 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.50 | 42.0 | 3.20e-01 | 100.0% | 39.4% |
D2
high
residues 72-146
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.52 | 36.0 | 3.56e-01 | 92.0% | 68.4% |