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5H_04062016_scaffold_1_prodigal-single.1__X__X__00028
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00028
Identity
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-64
D2
high
residues 77-155
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 53.0 | 4.47e-01 | 83.5% | 53.4% |
| 1zp2A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 45.0 | 3.98e-01 | 82.3% | 47.8% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.65 | 50.0 | 4.89e-01 | 84.8% | 75.9% |
| 3ejnA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.63 | 49.0 | 4.36e-01 | 82.3% | 91.9% |
| 5xtck00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 44.0 | 4.11e-01 | 72.2% | 68.0% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 48.0 | 4.76e-01 | 96.2% | 82.1% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 48.0 | 4.95e-01 | 87.3% | 92.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 42.0 | 4.56e-01 | 87.3% | 93.5% |
| 1ra6A03 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.60 | 38.0 | 3.68e-01 | 78.5% | 57.5% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 47.0 | 4.48e-01 | 86.1% | 83.7% |
| 4bejB02 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.58 | 49.0 | 3.59e-01 | 96.2% | 58.3% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.58 | 34.0 | 3.68e-01 | 100.0% | 68.7% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.55 | 39.0 | 3.11e-01 | 77.2% | 93.3% |
| 4kk2B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 42.0 | 2.85e-01 | 87.3% | 82.7% |
| 1uddA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.54 | 39.0 | 2.91e-01 | 77.2% | 50.2% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 42.0 | 3.41e-01 | 84.8% | 84.0% |
| 3kv0A01 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.54 | 47.0 | 3.70e-01 | 100.0% | 77.1% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.53 | 43.0 | 3.71e-01 | 91.1% | 78.2% |
| 6cgvM01 | 1.20.120.1500 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa | 0.53 | 41.0 | 3.50e-01 | 84.8% | 85.8% |
| 1e9fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 3.19e-01 | 88.6% | 66.3% |
| 1gu9C00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.53 | 45.0 | 3.62e-01 | 98.7% | 84.5% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 37.0 | 3.81e-01 | 73.4% | 84.0% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.52 | 39.0 | 3.39e-01 | 98.7% | 48.2% |
| 1ivhA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 39.0 | 3.30e-01 | 82.3% | 81.6% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.51 | 41.0 | 3.73e-01 | 91.1% | 74.1% |
| 5af7B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 38.0 | 3.16e-01 | 79.7% | 69.6% |
| 2b6cA01 | 1.20.1660.10 | Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068) | 0.51 | 37.0 | 3.37e-01 | 87.3% | 54.3% |
| 7cjsB01 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.51 | 41.0 | 3.19e-01 | 97.5% | 84.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3421325 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 57.0 | 5.69e-01 | 88.6% | 92.5% |
| 3625126 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.69 | 58.0 | 4.36e-01 | 91.1% | 90.3% |
| 4962283 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.69 | 58.0 | 5.85e-01 | 98.7% | 93.8% |
| 5016927 | 3843.1.1.39 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF6198 | 0.68 | 57.0 | 4.31e-01 | 91.1% | 93.5% |
| 3345767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.67 | 53.0 | 4.55e-01 | 84.8% | 54.4% |
| 5030388 | 129.1.1.5 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Ferric_reduct | 0.64 | 48.0 | 3.55e-01 | 78.5% | 43.0% |
| 3652068 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.64 | 46.0 | 3.90e-01 | 77.2% | 58.0% |
| 3969675 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.63 | 45.0 | 4.05e-01 | 74.7% | 85.5% |
| 4943352 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.63 | 56.0 | 3.84e-01 | 100.0% | 43.2% |
| 5011601 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 42.0 | 4.20e-01 | 78.5% | 70.0% |
| 3598515 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 37.0 | 3.54e-01 | 82.3% | 51.6% |
| 3303386 | 5050.1.1.15 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like | 0.60 | 47.0 | 3.40e-01 | 87.3% | 69.8% |
| 3220981 | 601.16.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › GIT1_C | 0.60 | 45.0 | 4.10e-01 | 82.3% | 82.7% |
| 3739839 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.58 | 44.0 | 4.05e-01 | 84.8% | 87.3% |
| 3640070 | 4110.1.1.1 ↗ | alpha arrays › UraD-like › UraD-like › UraD-like › OHCU_decarbox | 0.57 | 43.0 | 3.31e-01 | 82.3% | 86.3% |
| 5013248 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.57 | 44.0 | 3.76e-01 | 82.3% | 64.0% |
| 3515728 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.56 | 45.0 | 2.67e-01 | 87.3% | 14.8% |
| 4975050 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.56 | 38.0 | 3.96e-01 | 72.2% | 89.3% |
| 3416059 | 148.1.1.25 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Tim17 | 0.56 | 45.0 | 3.67e-01 | 89.9% | 65.8% |
| 4464661 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.53 | 42.0 | 3.56e-01 | 86.1% | 63.0% |
| 4062553 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.53 | 41.0 | 3.93e-01 | 87.3% | 73.3% |
| 4446522 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.53 | 42.0 | 3.50e-01 | 86.1% | 62.1% |
| 3573255 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.53 | 34.0 | 3.46e-01 | 100.0% | 66.3% |
| 3971690 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.52 | 45.0 | 3.94e-01 | 98.7% | 86.4% |
| 4426080 | 109.4.1.934 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR | 0.52 | 33.0 | 2.95e-01 | 92.4% | 45.5% |
| 3632115 | 109.4.1.102 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL | 0.52 | 37.0 | 2.27e-01 | 73.4% | 22.5% |
| 3616031 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 39.0 | 3.65e-01 | 79.7% | 82.1% |
| 3964945 | 633.30.1.0 ↗ | alpha bundles › Bromodomain-like › hypothetical protein ABAYE3784 › hypothetical protein ABAYE3784 | 0.51 | 41.0 | 3.74e-01 | 88.6% | 75.9% |
| 5034778 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.51 | 44.0 | 3.39e-01 | 97.5% | 71.6% |
| 3389546 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.50 | 38.0 | 3.80e-01 | 79.7% | 83.7% |
| 5006758 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.50 | 44.0 | 3.31e-01 | 97.5% | 67.9% |