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5H_04062016_scaffold_1_prodigal-single.1__X__X__00029
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00029
Identity
- Kingdom:
- phage
Quality
49.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 205-295
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26092.1 best | T4_Y16D | 28.9 | 1.50e-06 | 74.7% | 38.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jfdA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.56 | 37.0 | 4.22e-01 | 93.4% | 93.9% |
| 1kwmA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.54 | 40.0 | 4.05e-01 | 76.9% | 100.0% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 35.0 | 4.14e-01 | 75.8% | 100.0% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 34.0 | 3.79e-01 | 94.5% | 91.4% |
| 7d44I01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 40.0 | 2.97e-01 | 89.0% | 90.7% |
| 3hv8A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.50 | 38.0 | 2.87e-01 | 82.4% | 62.8% |
| 1ayeA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.50 | 38.0 | 3.70e-01 | 80.2% | 89.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5007357 | 3435.1.1.10 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 | 0.55 | 45.0 | 3.50e-01 | 94.5% | 77.8% |
| 5228 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.54 | 39.0 | 3.89e-01 | 76.9% | 93.7% |
| 4282163 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.53 | 39.0 | 4.33e-01 | 93.4% | 98.6% |
| 3742058 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 41.0 | 2.64e-01 | 84.6% | 26.0% |
| 4024040 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.53 | 36.0 | 4.01e-01 | 94.5% | 98.5% |
| 3276865 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.52 | 43.0 | 4.25e-01 | 92.3% | 89.0% |
| 3664975 | 207.1.1.323 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRRNT_2, LRR_6, LRR_8, Island | 0.52 | 36.0 | 2.16e-01 | 73.6% | 43.2% |
| 4927166 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.51 | 31.0 | 3.51e-01 | 70.3% | 83.1% |
| 3403404 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.51 | 38.0 | 4.06e-01 | 79.1% | 95.0% |
| 3394715 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.50 | 37.0 | 3.82e-01 | 76.9% | 90.6% |