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5H_04062016_scaffold_1_prodigal-single.1__X__X__00039
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00039
Identity
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-110
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.77 | 39.0 | 5.10e-01 | 78.7% | 85.7% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.70 | 40.0 | 4.12e-01 | 92.6% | 58.5% |
| 3ni8A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.67 | 40.0 | 3.71e-01 | 87.0% | 46.4% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.61 | 45.0 | 3.40e-01 | 75.9% | 73.7% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 46.0 | 4.64e-01 | 99.1% | 80.7% |
| 4bumX00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.58 | 42.0 | 3.10e-01 | 95.4% | 28.6% |
| 5e1qA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 38.0 | 3.98e-01 | 97.2% | 72.9% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.58 | 43.0 | 4.21e-01 | 95.4% | 72.0% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 46.0 | 3.57e-01 | 87.0% | 45.2% |
| 5mghA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 47.0 | 3.52e-01 | 95.4% | 78.5% |
| 2d73A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 38.0 | 3.77e-01 | 97.2% | 66.4% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.55 | 46.0 | 4.14e-01 | 100.0% | 66.2% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.52 | 45.0 | 4.24e-01 | 99.1% | 78.7% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.52 | 41.0 | 3.09e-01 | 88.0% | 79.1% |
| 1v0fA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 41.0 | 2.89e-01 | 87.0% | 49.0% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 46.0 | 4.05e-01 | 100.0% | 71.6% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 41.0 | 3.02e-01 | 87.0% | 89.5% |
| 1inpA02 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.51 | 41.0 | 3.45e-01 | 87.0% | 68.4% |
| 1wubA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.51 | 41.0 | 3.51e-01 | 88.0% | 59.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 165299 | 375.1.1.34 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Churchill | 0.70 | 40.0 | 4.12e-01 | 92.6% | 58.5% |
| 4988847 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 35.0 | 4.06e-01 | 86.1% | 76.0% |
| 3932316 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.62 | 38.0 | 3.58e-01 | 87.0% | 49.2% |
| 3651800 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.60 | 51.0 | 4.60e-01 | 93.5% | 67.6% |
| 1346676 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.60 | 46.0 | 4.64e-01 | 99.1% | 80.7% |
| 4880357 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.59 | 41.0 | 3.79e-01 | 86.1% | 56.7% |
| 2799093 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.59 | 42.0 | 3.06e-01 | 73.1% | 71.4% |
| 2659003 | 265.1.1.1 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat | 0.55 | 49.0 | 4.59e-01 | 99.1% | 82.5% |
| 3995693 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.54 | 37.0 | 3.97e-01 | 88.9% | 84.4% |
| 5021621 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.54 | 38.0 | 3.63e-01 | 75.0% | 85.9% |
| 3917054 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.53 | 41.0 | 3.96e-01 | 97.2% | 72.0% |
| 3786204 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.53 | 45.0 | 2.91e-01 | 94.4% | 71.4% |
| 3218637 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 43.0 | 3.50e-01 | 88.9% | 87.0% |
| 4949945 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 40.0 | 3.79e-01 | 83.3% | 90.8% |
| 3594422 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 46.0 | 3.92e-01 | 99.1% | 72.0% |
| 4269370 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.51 | 42.0 | 2.64e-01 | 89.8% | 24.1% |
| 3303879 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.51 | 42.0 | 3.35e-01 | 92.6% | 81.2% |
| 3843733 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.51 | 46.0 | 4.02e-01 | 100.0% | 70.7% |
| 4261427 | 5084.10.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD,LptD_2 | 0.51 | 42.0 | 2.62e-01 | 89.8% | 23.9% |
| 3990705 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.50 | 43.0 | 3.69e-01 | 100.0% | 57.8% |
| 5044412 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.50 | 43.0 | 3.31e-01 | 93.5% | 71.8% |