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5H_04062016_scaffold_1_prodigal-single.1__X__X__00047

Bact-Vir

5H_04062016_scaffold_1_prodigal-single.1__X__X__00047

Identity

Kingdom:
phage

Quality

88.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
D2 medium residues 52-107
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.76 57.0 4.05e-01 82.1% 32.2%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.75 52.0 3.07e-01 73.2% 20.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.74 57.0 3.97e-01 82.1% 34.5%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.74 51.0 4.37e-01 73.2% 47.8%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 53.0 3.22e-01 76.8% 67.1%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.72 51.0 3.16e-01 76.8% 88.5%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 48.0 3.10e-01 71.4% 49.0%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 53.0 3.49e-01 80.4% 61.6%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.69 61.0 4.48e-01 100.0% 59.1%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.68 60.0 4.35e-01 98.2% 71.2%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 54.0 3.71e-01 85.7% 48.6%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.67 57.0 4.39e-01 94.6% 52.8%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.67 53.0 4.32e-01 85.7% 92.1%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.66 50.0 3.67e-01 82.1% 64.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 58.0 4.39e-01 100.0% 57.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 58.0 4.46e-01 100.0% 55.9%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 54.0 4.12e-01 92.9% 46.6%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.65 54.0 4.09e-01 92.9% 63.7%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 54.0 4.24e-01 92.9% 62.2%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 51.0 4.19e-01 87.5% 54.8%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.65 55.0 4.92e-01 100.0% 97.6%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 55.0 4.34e-01 94.6% 73.7%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 54.0 4.29e-01 92.9% 53.5%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 57.0 4.35e-01 100.0% 69.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 56.0 4.26e-01 100.0% 66.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.63 48.0 4.56e-01 83.9% 80.6%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 49.0 3.11e-01 85.7% 73.8%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.62 42.0 3.43e-01 78.6% 35.4%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.98e-01 87.5% 96.4%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.62 51.0 5.03e-01 92.9% 86.9%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 3.88e-01 94.6% 55.0%
1c5kA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 50.0 3.26e-01 92.9% 93.6%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.62 49.0 3.31e-01 89.3% 48.7%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.62 54.0 4.04e-01 100.0% 65.8%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.61 54.0 4.17e-01 100.0% 82.0%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 53.0 4.24e-01 100.0% 58.8%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.61 52.0 3.86e-01 96.4% 71.3%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 51.0 3.99e-01 92.9% 51.3%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.61 46.0 2.96e-01 82.1% 82.0%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 50.0 3.96e-01 92.9% 67.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 53.0 4.19e-01 100.0% 82.5%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 49.0 3.99e-01 96.4% 88.3%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.60 42.0 4.36e-01 73.2% 82.4%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 44.0 2.77e-01 80.4% 73.0%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.60 50.0 3.74e-01 98.2% 66.9%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 51.0 3.60e-01 94.6% 48.5%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 52.0 4.10e-01 100.0% 81.7%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 49.0 3.01e-01 92.9% 84.7%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 49.0 2.90e-01 96.4% 93.5%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 3.81e-01 96.4% 61.5%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 4.31e-01 100.0% 64.8%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 3.55e-01 96.4% 56.0%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 43.0 3.05e-01 85.7% 63.2%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.56 49.0 3.77e-01 100.0% 43.5%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 48.0 3.65e-01 100.0% 53.7%
1gwmA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 45.0 3.37e-01 92.9% 53.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 46.0 2.89e-01 100.0% 99.1%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 3.58e-01 100.0% 65.8%
2q83B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.47e-01 87.5% 82.8%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 40.0 3.39e-01 91.1% 95.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.85 59.0 3.91e-01 73.2% 21.0%
3933159 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 54.0 3.33e-01 75.0% 89.0%
3981185 241.1.1.25 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.76 66.0 5.11e-01 94.6% 69.6%
3940325 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.76 54.0 3.41e-01 75.0% 46.2%
3874376 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.75 58.0 3.86e-01 82.1% 38.0%
5040339 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.75 59.0 3.51e-01 83.9% 49.2%
3540949 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 62.0 3.91e-01 96.4% 92.4%
3588455 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 58.0 5.41e-01 98.2% 72.9%
1148074 3400.1.1.1 a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.71 63.0 4.18e-01 100.0% 53.2%
3989333 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.70 53.0 5.27e-01 98.2% 78.3%
5040649 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.70 48.0 3.23e-01 73.2% 52.7%
4941519 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 52.0 3.12e-01 82.1% 61.5%
4961460 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.69 54.0 3.23e-01 83.9% 86.4%
1171964 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.68 50.0 4.94e-01 76.8% 96.6%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 60.0 5.19e-01 98.2% 74.1%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 48.0 3.26e-01 83.9% 20.0%
3479716 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.68 60.0 5.23e-01 100.0% 94.1%
3519579 295.1.1.20 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.68 58.0 5.18e-01 96.4% 68.8%
5005555 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.67 47.0 2.94e-01 73.2% 28.7%
3903931 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.67 50.0 3.11e-01 80.4% 78.7%
3966449 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.67 51.0 3.85e-01 83.9% 72.9%
3784810 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.67 46.0 3.93e-01 71.4% 48.4%
4002901 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.67 59.0 4.41e-01 100.0% 48.6%
4945022 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 54.0 4.44e-01 87.5% 51.0%
4946587 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 55.0 4.24e-01 92.9% 44.6%
3227515 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.66 55.0 4.21e-01 100.0% 40.3%
2998372 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 50.0 5.18e-01 83.9% 86.8%
5082957 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 46.0 2.92e-01 73.2% 29.5%
5057301 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 47.0 3.10e-01 76.8% 48.4%
3811973 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.64 45.0 2.82e-01 73.2% 43.9%
3647236 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 57.0 3.84e-01 98.2% 35.1%
5071935 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 56.0 4.30e-01 100.0% 81.5%
3827261 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 58.0 4.37e-01 100.0% 43.8%
5077363 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 53.0 4.10e-01 94.6% 69.2%
3254501 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 53.0 3.35e-01 92.9% 94.4%
3808328 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 56.0 4.33e-01 100.0% 45.6%
3834262 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.63 57.0 4.19e-01 100.0% 40.7%
3341742 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 56.0 4.06e-01 100.0% 54.2%
3728783 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.63 55.0 4.11e-01 98.2% 65.0%
3507450 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.62 55.0 4.26e-01 100.0% 64.8%
5052370 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 50.0 4.08e-01 91.1% 51.8%
3259927 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 53.0 3.31e-01 94.6% 89.3%
4960423 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 46.0 2.85e-01 80.4% 50.7%
3361286 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 47.0 2.90e-01 87.5% 80.8%
4946333 5.1.3.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › AXE1 0.61 48.0 2.89e-01 87.5% 82.7%
5791 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.61 53.0 4.20e-01 100.0% 83.2%
3782836 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 54.0 3.25e-01 100.0% 70.1%
5012828 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.60 50.0 3.12e-01 100.0% 88.2%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 52.0 4.23e-01 100.0% 64.5%
5062536 5.1.4.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Glu_cyclase_2 0.60 51.0 3.45e-01 100.0% 78.2%
4031110 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.65e-01 89.3% 44.8%
5014159 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 50.0 3.94e-01 100.0% 67.2%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.58 46.0 4.14e-01 89.3% 66.3%
3821398 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 48.0 3.08e-01 98.2% 89.5%
5019409 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 48.0 3.06e-01 100.0% 86.9%
3953302 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.57 46.0 3.90e-01 94.6% 68.3%
3412604 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.56 49.0 2.99e-01 98.2% 84.8%
5081985 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.05e-01 98.2% 74.1%
3743467 5.1.4.332 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.55 49.0 3.01e-01 100.0% 69.1%
4028948 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.87e-01 100.0% 85.3%
4812524 5.1.2.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.55 42.0 2.54e-01 87.5% 82.5%
3659226 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 41.0 2.77e-01 83.9% 22.2%