←Back to structures
5H_04062016_scaffold_1_prodigal-single.1__X__X__00055
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
59.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-110
Domain cluster:
rep: PH2015_20_scaffold_1_prodigal-single.1__X__X__00025__D35-116
D2
high
residues 386-463
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aa7A02 | 1.10.10.180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 | 0.69 | 53.0 | 5.31e-01 | 83.3% | 88.5% |
| 3usyA01 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.68 | 47.0 | 4.39e-01 | 80.8% | 58.3% |
| 1ug3A02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.67 | 55.0 | 4.70e-01 | 92.3% | 77.3% |
| 1dgfA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.65 | 54.0 | 4.77e-01 | 92.3% | 99.1% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.64 | 46.0 | 4.19e-01 | 76.9% | 81.5% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.62 | 46.0 | 3.90e-01 | 80.8% | 93.4% |
| 6cgvM01 | 1.20.120.1500 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa | 0.61 | 34.0 | 2.90e-01 | 84.6% | 32.1% |
| 1n00A01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.60 | 46.0 | 4.59e-01 | 84.6% | 90.5% |
| 5ctrA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 52.0 | 3.50e-01 | 97.4% | 27.9% |
| 6nhiA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 53.0 | 3.44e-01 | 98.7% | 44.5% |
| 6vvoC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 43.0 | 4.16e-01 | 80.8% | 82.4% |
| 4me2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 48.0 | 3.64e-01 | 93.6% | 62.9% |
| 6hftA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 49.0 | 4.28e-01 | 100.0% | 85.8% |
| 6xssA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 45.0 | 4.78e-01 | 93.6% | 100.0% |
| 2yvyA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.57 | 47.0 | 4.13e-01 | 97.4% | 60.0% |
| 1tu9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 43.0 | 3.71e-01 | 83.3% | 71.8% |
| 1v7mV00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 42.0 | 3.40e-01 | 78.2% | 75.2% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 48.0 | 4.23e-01 | 98.7% | 93.3% |
| 2z0qA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.56 | 42.0 | 3.18e-01 | 80.8% | 60.6% |
| 4an8A02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.55 | 39.0 | 3.31e-01 | 73.1% | 77.0% |
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 47.0 | 4.20e-01 | 100.0% | 69.7% |
| 3aqbB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 40.0 | 2.73e-01 | 82.1% | 52.0% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.53 | 42.0 | 3.81e-01 | 89.7% | 76.3% |
| 4j7zF00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 47.0 | 4.41e-01 | 100.0% | 93.6% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.52 | 38.0 | 3.80e-01 | 84.6% | 73.2% |
| 4a9aA01 | 6.10.140.1070 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 38.0 | 3.43e-01 | 80.8% | 79.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3673344 | 109.4.1.1295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 | 0.71 | 52.0 | 3.51e-01 | 79.5% | 22.0% |
| 3497021 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.70 | 51.0 | 4.65e-01 | 76.9% | 74.3% |
| 3202189 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.67 | 58.0 | 5.64e-01 | 98.7% | 88.2% |
| 3627882 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.65 | 46.0 | 4.57e-01 | 74.4% | 90.0% |
| 3434578 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.62 | 54.0 | 4.86e-01 | 100.0% | 75.5% |
| 4358653 | 185.1.1.8 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Glutenin_hmw | 0.61 | 42.0 | 4.18e-01 | 71.8% | 90.0% |
| 3638229 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 47.0 | 3.24e-01 | 84.6% | 28.4% |
| 4944315 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 52.0 | 4.18e-01 | 98.7% | 81.2% |
| 3716313 | 109.4.1.1966 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30299, PF30301 | 0.58 | 50.0 | 3.07e-01 | 98.7% | 15.2% |
| 5020501 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.58 | 48.0 | 3.92e-01 | 91.0% | 62.8% |
| 5073062 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.55 | 38.0 | 3.43e-01 | 73.1% | 69.6% |
| 1148717 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.55 | 45.0 | 4.65e-01 | 93.6% | 97.3% |
| 5002083 | 1076.1.1.4 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease | 0.54 | 40.0 | 3.30e-01 | 80.8% | 78.7% |
| 3316583 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 3.87e-01 | 98.7% | 84.1% |
| 2814210 | 109.4.1.1427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_8, TPR_19 | 0.54 | 43.0 | 4.41e-01 | 93.6% | 100.0% |
| 4025903 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.53 | 36.0 | 3.68e-01 | 73.1% | 73.3% |
D3
high
residues 543-599
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hgcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 43.0 | 3.87e-01 | 75.4% | 51.3% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 42.0 | 3.94e-01 | 70.2% | 100.0% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 41.0 | 3.46e-01 | 80.7% | 43.2% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.60 | 44.0 | 3.73e-01 | 78.9% | 86.3% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.53 | 44.0 | 3.09e-01 | 93.0% | 90.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3362103 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.63 | 47.0 | 3.60e-01 | 78.9% | 66.9% |
| 2814626 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.53 | 43.0 | 2.73e-01 | 89.5% | 62.0% |