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5H_04062016_scaffold_1_prodigal-single.1__X__X__00169
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00169
Identity
- Kingdom:
- phage
Quality
65.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-117
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hn9A02 | 1.20.58.2180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 28.0 | 3.34e-01 | 78.1% | 64.7% |
| 8h8jC01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 43.0 | 3.28e-01 | 81.0% | 98.5% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.55 | 41.0 | 3.95e-01 | 81.9% | 92.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3774674 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 40.0 | 2.92e-01 | 81.0% | 84.8% |
| 5066226 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.50 | 30.0 | 3.68e-01 | 75.2% | 96.9% |
D2
high
residues 264-304
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eg5B01 | 1.10.20.40 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Formin, diaphanous GTPase-binding domain | 0.73 | 61.0 | 6.16e-01 | 100.0% | 100.0% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.71 | 59.0 | 4.04e-01 | 95.1% | 61.0% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.66 | 42.0 | 3.32e-01 | 80.5% | 30.7% |
| 2zshB00 | 1.10.10.1290 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transcriptional regulator DELLA, N-terminal domain | 0.62 | 40.0 | 3.49e-01 | 97.6% | 45.8% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.61 | 45.0 | 4.16e-01 | 80.5% | 60.0% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.55 | 48.0 | 3.33e-01 | 100.0% | 36.6% |
D3
high
residues 665-748
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 39.0 | 3.50e-01 | 98.8% | 43.4% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 48.0 | 3.90e-01 | 100.0% | 74.4% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 49.0 | 4.02e-01 | 100.0% | 79.9% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 48.0 | 4.09e-01 | 100.0% | 90.8% |
| 5bncB01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 47.0 | 3.97e-01 | 100.0% | 89.9% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 47.0 | 4.03e-01 | 100.0% | 74.6% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 43.0 | 4.21e-01 | 95.2% | 80.4% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 48.0 | 4.07e-01 | 100.0% | 92.0% |
| 2m6pA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.54 | 30.0 | 3.68e-01 | 92.9% | 97.8% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 47.0 | 4.18e-01 | 100.0% | 83.9% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 46.0 | 3.90e-01 | 98.8% | 86.7% |
| 2asfA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 46.0 | 4.08e-01 | 100.0% | 88.8% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 34.0 | 3.78e-01 | 78.6% | 82.4% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 47.0 | 4.02e-01 | 100.0% | 82.2% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 43.0 | 2.79e-01 | 92.9% | 34.1% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 4.01e-01 | 97.6% | 89.7% |
| 1xhnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 45.0 | 3.69e-01 | 100.0% | 91.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.51 | 36.0 | 3.80e-01 | 94.0% | 84.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4941845 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 34.0 | 4.18e-01 | 85.7% | 83.0% |
| 2099294 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.55 | 48.0 | 4.09e-01 | 100.0% | 90.8% |
| 3449628 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 47.0 | 4.26e-01 | 98.8% | 69.6% |
| 3447254 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 47.0 | 3.48e-01 | 98.8% | 36.4% |
| 3987692 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.54 | 40.0 | 4.32e-01 | 95.2% | 94.3% |
| 3315166 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.53 | 32.0 | 3.17e-01 | 86.9% | 55.6% |
| 3391863 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.53 | 37.0 | 3.06e-01 | 76.2% | 70.0% |
| 1112626 | 5.1.3.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN | 0.52 | 43.0 | 2.77e-01 | 92.9% | 33.6% |
| 5002457 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 45.0 | 4.03e-01 | 100.0% | 91.9% |
| 5081122 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.51 | 34.0 | 3.23e-01 | 94.0% | 57.0% |
| 3270102 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.51 | 45.0 | 2.90e-01 | 100.0% | 48.2% |
D4
medium
residues 315-380
Domain cluster:
rep: BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00112__D456-513
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11450.14 best | DUF3008 | 34.7 | 2.20e-08 | 86.4% | 100.0% |
D5
medium
residues 381-446
Domain cluster:
rep: BML_coassembly_scaffold_69_prodigal-single.1__X__X__00311__D70-122
D6
medium
residues 589-661