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5H_04062016_scaffold_1_prodigal-single.1__X__X__00178
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00178
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-88
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_3_prodigal-single.1__X__X__00114__D1-83
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.76 | 41.0 | 4.39e-01 | 83.0% | 61.5% |
| 3lnrA00 | 1.20.120.1530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.75 | 44.0 | 3.54e-01 | 75.0% | 31.9% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.73 | 45.0 | 4.69e-01 | 71.6% | 67.1% |
| 6q45G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.72 | 50.0 | 4.20e-01 | 71.6% | 69.2% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.69 | 49.0 | 4.46e-01 | 87.5% | 54.0% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.67 | 37.0 | 3.96e-01 | 72.7% | 61.8% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 38.0 | 4.41e-01 | 76.1% | 77.3% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 46.0 | 4.58e-01 | 77.3% | 87.0% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.62 | 38.0 | 3.67e-01 | 80.7% | 53.5% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 41.0 | 4.11e-01 | 71.6% | 67.0% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 46.0 | 3.59e-01 | 83.0% | 82.9% |
| 3n3wA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.60 | 47.0 | 3.97e-01 | 98.9% | 50.7% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 41.0 | 3.61e-01 | 71.6% | 69.2% |
| 6bz0D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 45.0 | 3.41e-01 | 84.1% | 48.7% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 41.0 | 4.30e-01 | 75.0% | 85.2% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 43.0 | 4.01e-01 | 81.8% | 64.5% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.55 | 33.0 | 3.34e-01 | 78.4% | 58.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.55 | 38.0 | 3.98e-01 | 72.7% | 80.8% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.55 | 47.0 | 4.17e-01 | 93.2% | 66.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4570960 | 605.1.1.137 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › RRP36 | 0.69 | 53.0 | 4.25e-01 | 80.7% | 43.8% |
| 5040955 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.69 | 52.0 | 4.97e-01 | 81.8% | 68.6% |
| 4531598 | 4970.1.1.14 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RRP36 | 0.68 | 52.0 | 4.23e-01 | 80.7% | 45.2% |
| 3591835 | 632.5.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylocoagulase › Staphylocoagulase | 0.68 | 54.0 | 5.31e-01 | 93.2% | 81.1% |
| 3635635 | 3826.1.1.26 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RRP36 | 0.67 | 51.0 | 4.28e-01 | 80.7% | 48.6% |
| 4930860 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.66 | 49.0 | 4.89e-01 | 78.4% | 76.7% |
| 4453591 | 3602.1.1.4 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › RRP36 | 0.66 | 50.0 | 4.30e-01 | 80.7% | 51.9% |
| 3184698 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.66 | 50.0 | 4.96e-01 | 78.4% | 86.7% |
| 3554386 | 3755.3.1.309 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Mis12 | 0.65 | 53.0 | 5.08e-01 | 89.8% | 78.0% |
| 4958384 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.64 | 43.0 | 4.34e-01 | 79.5% | 67.8% |
| 3393615 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.63 | 45.0 | 4.23e-01 | 75.0% | 61.8% |
| 3937797 | 3542.1.1.1 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin | 0.63 | 50.0 | 3.38e-01 | 85.2% | 82.5% |
| 3291377 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.62 | 46.0 | 4.51e-01 | 78.4% | 74.7% |
| 4574845 | 1075.3.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N | 0.62 | 53.0 | 3.68e-01 | 96.6% | 37.3% |
| 5024245 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.62 | 45.0 | 4.17e-01 | 76.1% | 63.6% |
| 3164721 | 1078.1.1.0 ↗ | extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit | 0.61 | 47.0 | 4.71e-01 | 83.0% | 82.2% |
| 5044842 | 212.1.1.22 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans | 0.61 | 42.0 | 3.20e-01 | 71.6% | 82.3% |
| 4957808 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.60 | 46.0 | 4.36e-01 | 80.7% | 67.6% |
| 4157142 | 150.5.1.7 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Mis12 | 0.59 | 50.0 | 4.67e-01 | 97.7% | 83.5% |
| 4025584 | 1008.1.1.0 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain | 0.59 | 45.0 | 3.49e-01 | 81.8% | 36.0% |
| 4951651 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.57 | 38.0 | 4.22e-01 | 78.4% | 89.7% |
| 3739470 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.55 | 40.0 | 3.45e-01 | 78.4% | 76.6% |
| 4118017 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.54 | 45.0 | 4.37e-01 | 93.2% | 98.0% |
| 3386594 | 3291.1.1.197 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MCPsignal | 0.54 | 41.0 | 3.89e-01 | 80.7% | 80.0% |
| 3169158 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.53 | 38.0 | 3.85e-01 | 77.3% | 81.1% |
| 4225216 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.51 | 36.0 | 3.54e-01 | 92.0% | 69.5% |