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5H_04062016_scaffold_1_prodigal-single.1__X__X__00192
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00192
Identity
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-47
D2
high
residues 61-143
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wp0D00 | 3.30.300.180 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain | 0.74 | 51.0 | 5.09e-01 | 72.3% | 100.0% |
| 4tpsD00 | 3.30.300.180 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain | 0.74 | 51.0 | 5.08e-01 | 71.1% | 91.7% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.70 | 49.0 | 3.98e-01 | 73.5% | 72.1% |
| 2e0gA00 | 3.30.300.180 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain | 0.69 | 51.0 | 4.66e-01 | 77.1% | 75.7% |
| 2jmpA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.66 | 51.0 | 5.09e-01 | 84.3% | 100.0% |
| 1ny8A00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.66 | 52.0 | 5.01e-01 | 86.7% | 89.7% |
| 2rffA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.62 | 55.0 | 4.98e-01 | 98.8% | 79.3% |
| 2xr1A01 | 3.30.300.230 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.61 | 53.0 | 5.11e-01 | 97.6% | 91.5% |
| 3af5A01 | 3.30.300.230 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.59 | 51.0 | 5.00e-01 | 97.6% | 90.1% |
| 1rkqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.58 | 42.0 | 3.85e-01 | 74.7% | 95.3% |
| 6b10A00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.56 | 48.0 | 3.33e-01 | 100.0% | 92.4% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 38.0 | 3.60e-01 | 72.3% | 91.5% |
| 2hf2B02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.54 | 39.0 | 3.63e-01 | 75.9% | 92.5% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.54 | 38.0 | 3.53e-01 | 72.3% | 93.4% |
| 3dnpA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.54 | 38.0 | 3.51e-01 | 75.9% | 94.7% |
| 2b78A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 42.0 | 3.27e-01 | 91.6% | 71.2% |
| 2b30A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.53 | 36.0 | 3.40e-01 | 72.3% | 90.8% |
| 1f06A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 44.0 | 3.80e-01 | 98.8% | 68.1% |
| 4zevA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.51 | 35.0 | 3.31e-01 | 73.5% | 93.5% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.50 | 35.0 | 3.39e-01 | 75.9% | 96.0% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956558 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.72 | 51.0 | 5.65e-01 | 73.5% | 96.9% |
| 4983257 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.72 | 50.0 | 5.57e-01 | 72.3% | 100.0% |
| 4975658 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.72 | 50.0 | 5.59e-01 | 72.3% | 92.3% |
| 5054548 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.71 | 52.0 | 5.74e-01 | 75.9% | 98.5% |
| 4994961 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.70 | 50.0 | 4.94e-01 | 75.9% | 73.3% |
| 5059571 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.69 | 49.0 | 5.31e-01 | 75.9% | 88.6% |
| 5000739 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.69 | 49.0 | 5.48e-01 | 75.9% | 98.5% |
| 3164240 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.69 | 46.0 | 4.99e-01 | 75.9% | 82.9% |
| 3964334 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.66 | 47.0 | 4.90e-01 | 73.5% | 85.3% |
| 4304198 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.66 | 51.0 | 4.74e-01 | 83.1% | 90.5% |
| 4412985 | 327.10.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N | 0.66 | 56.0 | 5.51e-01 | 94.0% | 98.9% |
| 4581150 | 874.1.1.0 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain | 0.63 | 55.0 | 4.07e-01 | 100.0% | 87.4% |
| 5057095 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.63 | 43.0 | 4.49e-01 | 71.1% | 85.3% |
| 5044612 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.63 | 43.0 | 4.49e-01 | 71.1% | 88.0% |
| 3826200 | 2003.1.5.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F | 0.62 | 43.0 | 3.44e-01 | 80.7% | 33.9% |
| 4542368 | 327.1.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain › PF28778 | 0.62 | 40.0 | 4.53e-01 | 71.1% | 91.7% |
| 5054115 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.62 | 55.0 | 5.10e-01 | 100.0% | 88.6% |
| 5030644 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.61 | 53.0 | 4.87e-01 | 97.6% | 90.0% |
| 4948516 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.60 | 46.0 | 4.03e-01 | 84.3% | 93.2% |
| 4105344 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.60 | 41.0 | 4.28e-01 | 71.1% | 84.0% |
| 5034123 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.60 | 42.0 | 3.73e-01 | 74.7% | 95.2% |
| 2771393 | 327.8.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › MshEN | 0.59 | 44.0 | 4.36e-01 | 100.0% | 74.2% |
| 4032021 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.59 | 43.0 | 4.04e-01 | 77.1% | 93.3% |
| 4227542 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.59 | 54.0 | 3.17e-01 | 100.0% | 34.4% |
| 3963826 | 327.8.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › MshEN | 0.59 | 43.0 | 4.42e-01 | 100.0% | 81.2% |
| 4993544 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.59 | 50.0 | 4.72e-01 | 98.8% | 93.3% |
| 4936382 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.59 | 40.0 | 3.62e-01 | 71.1% | 92.5% |
| 1514768 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.58 | 40.0 | 3.48e-01 | 72.3% | 61.7% |
| 4326814 | 327.10.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N | 0.57 | 50.0 | 4.99e-01 | 100.0% | 94.1% |
| 5007070 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.57 | 44.0 | 4.46e-01 | 96.4% | 84.3% |
| 3988613 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.57 | 41.0 | 3.74e-01 | 74.7% | 93.6% |
| 3386722 | 327.8.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like | 0.57 | 41.0 | 4.22e-01 | 100.0% | 80.0% |
| 3963230 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.56 | 38.0 | 3.91e-01 | 71.1% | 93.8% |
| 3979016 | 327.4.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain | 0.56 | 47.0 | 4.19e-01 | 97.6% | 64.0% |
| 3968611 | 327.8.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › MshEN | 0.55 | 41.0 | 4.02e-01 | 100.0% | 74.4% |
| 3942893 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.55 | 38.0 | 3.62e-01 | 72.3% | 95.0% |
| 4025019 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.55 | 38.0 | 3.30e-01 | 72.3% | 93.8% |
| 3519829 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.54 | 38.0 | 3.55e-01 | 73.5% | 95.2% |
| 4444873 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.54 | 38.0 | 3.56e-01 | 74.7% | 91.4% |
| 4939916 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.53 | 37.0 | 3.65e-01 | 73.5% | 91.1% |
| 4010106 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.53 | 38.0 | 3.52e-01 | 75.9% | 96.4% |
| 4028219 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.53 | 36.0 | 3.39e-01 | 72.3% | 90.0% |
| 4538536 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.52 | 41.0 | 2.99e-01 | 90.4% | 57.1% |
| 3969775 | 327.8.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › GSPE_N1E | 0.52 | 35.0 | 3.82e-01 | 96.4% | 92.3% |
| None | — | 0.51 | 43.0 | 2.98e-01 | 98.8% | 35.5% | |
| 4952260 | 304.3.2.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › Peptide methionine sulfoxide reductase › PMSR | 0.51 | 41.0 | 3.58e-01 | 94.0% | 80.7% |
| 4133040 | 2484.2.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N | 0.50 | 30.0 | 3.12e-01 | 97.6% | 61.3% |
| 3284318 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.50 | 41.0 | 3.03e-01 | 92.8% | 91.7% |
| 2076068 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.50 | 35.0 | 3.32e-01 | 74.7% | 94.3% |