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5H_04062016_scaffold_1_prodigal-single.1__X__X__00198
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00198
Identity
- Kingdom:
- phage
Quality
91.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-52
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA03 | 3.30.1120.70 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.74 | 65.0 | 6.53e-01 | 100.0% | 98.0% |
| 1s3rA03 | 3.40.30.40 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin | 0.67 | 56.0 | 4.21e-01 | 100.0% | 37.2% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 51.0 | 4.70e-01 | 83.7% | 100.0% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 4.17e-01 | 100.0% | 89.1% |
| 3hx9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 4.13e-01 | 100.0% | 90.8% |
| 2xczA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.60 | 49.0 | 3.92e-01 | 98.0% | 88.6% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 51.0 | 4.13e-01 | 100.0% | 77.8% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 47.0 | 3.48e-01 | 87.8% | 78.8% |
| 1kvdB00 | 3.30.44.10 | Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain | 0.58 | 49.0 | 4.35e-01 | 100.0% | 80.5% |
| 1j5uA01 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.56 | 45.0 | 3.47e-01 | 89.8% | 100.0% |
| 2okqB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 45.0 | 3.57e-01 | 100.0% | 84.7% |
| 2zgiA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.54 | 38.0 | 3.14e-01 | 77.6% | 61.6% |
| 2av5A00 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.53 | 42.0 | 3.51e-01 | 100.0% | 82.1% |
| 2krxA01 | 3.90.940.40 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 | 0.52 | 39.0 | 3.48e-01 | 83.7% | 88.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4554584 | 304.20.1.5 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f | 0.62 | 52.0 | 3.49e-01 | 100.0% | 72.1% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.62 | 50.0 | 3.19e-01 | 100.0% | 18.0% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.62 | 48.0 | 3.14e-01 | 98.0% | 16.8% |
| 3193204 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.61 | 49.0 | 3.08e-01 | 98.0% | 43.5% |
| 3719492 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.60 | 47.0 | 2.90e-01 | 85.7% | 83.8% |
| 5036975 | 231.1.3.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Neutral ceramidase large domain | 0.60 | 54.0 | 3.11e-01 | 100.0% | 51.4% |
| 3470633 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.59 | 46.0 | 3.12e-01 | 85.7% | 92.8% |
| 1159021 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.59 | 44.0 | 4.01e-01 | 85.7% | 94.4% |
| 3672469 | 304.55.1.18 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › ACT | 0.58 | 41.0 | 3.02e-01 | 75.5% | 52.2% |
| 3541003 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.58 | 43.0 | 3.34e-01 | 79.6% | 63.0% |
| 3962210 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 41.0 | 3.87e-01 | 79.6% | 95.4% |
| 3869516 | 327.11.2.56 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 | 0.58 | 41.0 | 3.81e-01 | 77.6% | 95.4% |
| 4015840 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.58 | 45.0 | 2.97e-01 | 85.7% | 86.7% |
| 4662659 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.56 | 45.0 | 3.10e-01 | 100.0% | 73.8% |
| 3775223 | 10.32.1.183 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM87A-B_GOLD | 0.56 | 44.0 | 3.18e-01 | 100.0% | 27.6% |
| 4028803 | 6127.1.1.0 ↗ | beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein | 0.54 | 37.0 | 3.12e-01 | 73.5% | 49.5% |
| 4278928 | 4020.1.1.1 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.53 | 40.0 | 3.12e-01 | 81.6% | 63.6% |
| 3936956 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 37.0 | 2.95e-01 | 77.6% | 60.9% |