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5H_04062016_scaffold_1_prodigal-single.1__X__X__00264

Bact-Vir

5H_04062016_scaffold_1_prodigal-single.1__X__X__00264

Identity

Kingdom:
phage

Quality

85.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.63 39.0 3.06e-01 100.0% 28.3%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.93e-01 84.1% 91.5%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.54 41.0 4.00e-01 84.1% 94.5%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.63e-01 100.0% 64.9%
3pufL00 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.51e-01 95.2% 48.3%
3zjyC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 4.12e-01 95.2% 82.4%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.51 43.0 3.60e-01 100.0% 67.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3813907 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 44.0 4.71e-01 100.0% 87.3%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.60 47.0 4.62e-01 85.7% 91.4%
3309792 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.57 42.0 4.26e-01 100.0% 83.3%
3813194 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 39.0 3.98e-01 100.0% 78.3%
3804641 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 41.0 4.25e-01 98.4% 88.3%
3712376 2.1.1.225 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.55 43.0 3.52e-01 85.7% 88.3%
4274205 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.55 46.0 3.35e-01 100.0% 62.5%
4020073 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.73e-01 100.0% 68.6%
None — 0.54 46.0 3.19e-01 100.0% 43.0%
3806994 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 41.0 4.08e-01 98.4% 83.1%
4183965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.96e-01 100.0% 91.0%
3598854 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 3.60e-01 100.0% 59.3%
4489845 2.25.1.1 ↗ beta barrels › OB-fold › OB domain in IgaA › OB domain in IgaA › IgaA 0.52 44.0 4.09e-01 100.0% 87.1%
3807932 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.52 42.0 3.58e-01 100.0% 52.2%
3477291 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.52 44.0 3.04e-01 100.0% 59.9%
1146564 11.1.1.183 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4426 0.51 43.0 3.63e-01 100.0% 70.0%
3475071 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.51 43.0 3.77e-01 100.0% 96.0%
3374213 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 38.0 3.43e-01 85.7% 96.8%