←Back to structures
5H_04062016_scaffold_1_prodigal-single.1__X__X__00271
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00271
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-81
Domain cluster:
rep: IMGVR_UViG_3300028568_000046-3300028568-Ga0255345_100206332__D10-69
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.75 | 61.0 | 5.13e-01 | 98.5% | 53.6% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.68 | 57.0 | 5.72e-01 | 95.5% | 97.0% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 56.0 | 5.22e-01 | 97.0% | 82.1% |
| 1sxjE02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 48.0 | 4.89e-01 | 95.5% | 81.2% |
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.64 | 48.0 | 4.21e-01 | 81.8% | 83.3% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.63 | 49.0 | 3.28e-01 | 86.4% | 25.6% |
| 2kebA00 | 1.10.8.530 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain | 0.59 | 48.0 | 4.66e-01 | 100.0% | 80.8% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.59 | 47.0 | 4.31e-01 | 95.5% | 90.6% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 43.0 | 4.09e-01 | 81.8% | 79.7% |
| 1eu8A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 46.0 | 3.32e-01 | 98.5% | 77.0% |
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.56 | 45.0 | 3.61e-01 | 90.9% | 68.3% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.55 | 49.0 | 4.66e-01 | 100.0% | 100.0% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 39.0 | 3.82e-01 | 84.8% | 95.9% |
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.52 | 43.0 | 3.56e-01 | 100.0% | 70.3% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.14e-01 | 92.4% | 63.6% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 4.04e-01 | 86.4% | 96.6% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4651138 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.77 | 56.0 | 5.85e-01 | 93.9% | 83.3% |
| 3935477 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 64.0 | 6.31e-01 | 100.0% | 94.3% |
| 3582922 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 57.0 | 5.40e-01 | 100.0% | 73.8% |
| 4026426 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 44.0 | 4.92e-01 | 89.4% | 86.0% |
| 4157292 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.69 | 53.0 | 5.51e-01 | 98.5% | 90.0% |
| 5073064 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.69 | 58.0 | 5.91e-01 | 92.4% | 98.5% |
| 5047035 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.68 | 54.0 | 5.61e-01 | 89.4% | 96.7% |
| 4992926 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.68 | 59.0 | 5.71e-01 | 98.5% | 90.7% |
| 3412952 | 103.1.1.85 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28528 | 0.67 | 52.0 | 5.45e-01 | 100.0% | 95.0% |
| 4971986 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.67 | 58.0 | 4.79e-01 | 92.4% | 99.1% |
| 5046776 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.66 | 57.0 | 5.79e-01 | 95.5% | 96.9% |
| 4325816 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.65 | 55.0 | 3.79e-01 | 100.0% | 97.3% |
| 4410233 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.65 | 44.0 | 4.84e-01 | 95.5% | 94.0% |
| 4958599 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.64 | 56.0 | 3.73e-01 | 100.0% | 92.0% |
| 5077267 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.64 | 47.0 | 3.86e-01 | 81.8% | 94.1% |
| 4984673 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.63 | 53.0 | 3.64e-01 | 100.0% | 95.8% |
| 4031347 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.62 | 52.0 | 3.54e-01 | 100.0% | 94.9% |
| 4198171 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.62 | 51.0 | 3.56e-01 | 100.0% | 95.8% |
| 5016437 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.61 | 45.0 | 3.67e-01 | 78.8% | 95.2% |
| 4930668 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.61 | 50.0 | 3.91e-01 | 92.4% | 67.6% |
| 4933655 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.61 | 42.0 | 4.41e-01 | 95.5% | 89.1% |
| 3887909 | 148.1.3.5 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N | 0.61 | 47.0 | 4.62e-01 | 95.5% | 78.7% |
| 3224423 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.59 | 41.0 | 4.40e-01 | 72.7% | 87.3% |
| 3730771 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.58 | 42.0 | 3.96e-01 | 90.9% | 61.2% |
| 5024090 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 48.0 | 4.59e-01 | 98.5% | 81.2% |
| 4012511 | 103.12.1.5 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › GCR1_C | 0.55 | 46.0 | 4.02e-01 | 92.4% | 95.0% |
| 3920924 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.55 | 44.0 | 2.82e-01 | 89.4% | 32.5% |
| 3243820 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.53 | 42.0 | 2.80e-01 | 93.9% | 57.3% |
| 3354615 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.52 | 44.0 | 3.26e-01 | 100.0% | 69.7% |
| 4024324 | 4984.1.1.0 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain | 0.51 | 42.0 | 3.41e-01 | 100.0% | 92.7% |
| 5061573 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 38.0 | 2.71e-01 | 81.8% | 56.0% |
| 3454208 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.50 | 40.0 | 3.77e-01 | 86.4% | 95.0% |
| 3942447 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.50 | 41.0 | 3.42e-01 | 100.0% | 76.4% |