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5H_04062016_scaffold_1_prodigal-single.1__X__X__00288

Bact-Vir

5H_04062016_scaffold_1_prodigal-single.1__X__X__00288

Identity

Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tuaA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.72 64.0 5.40e-01 100.0% 88.6%
4fjvA02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.59 44.0 3.43e-01 81.0% 43.1%
1e6dM01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.53 45.0 3.38e-01 92.1% 42.0%
4r2fA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 41.0 3.00e-01 92.1% 84.4%
3thxA03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.50 39.0 2.82e-01 93.7% 50.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3734334 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 44.0 3.86e-01 73.0% 80.0%
3256356 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 38.0 3.80e-01 79.4% 92.2%
D2 high residues 76-126
PDB