←Back to structures
5H_04062016_scaffold_1_prodigal-single.1__X__X__00330
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00330
Identity
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g6tB00 | 6.10.20.120 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.80 | 51.0 | 4.48e-01 | 80.0% | 46.5% |
| 3pf7B00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.78 | 66.0 | 3.78e-01 | 92.0% | 26.4% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.75 | 63.0 | 4.09e-01 | 96.0% | 44.0% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 63.0 | 4.81e-01 | 92.0% | 56.0% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.73 | 53.0 | 4.22e-01 | 78.0% | 99.0% |
| 5ttjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.72 | 49.0 | 3.19e-01 | 72.0% | 36.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.69 | 47.0 | 3.81e-01 | 72.0% | 80.4% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.66 | 46.0 | 3.58e-01 | 88.0% | 31.9% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.66 | 58.0 | 4.32e-01 | 100.0% | 58.6% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 50.0 | 4.08e-01 | 86.0% | 93.8% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.64 | 44.0 | 3.16e-01 | 74.0% | 35.9% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 43.0 | 3.55e-01 | 70.0% | 38.1% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.64 | 50.0 | 3.02e-01 | 86.0% | 61.6% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 49.0 | 3.77e-01 | 82.0% | 88.3% |
| 2i71A01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.63 | 49.0 | 3.15e-01 | 84.0% | 47.1% |
| 7yj5A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.63 | 45.0 | 3.20e-01 | 76.0% | 35.5% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 52.0 | 3.16e-01 | 94.0% | 28.6% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 46.0 | 4.04e-01 | 82.0% | 52.6% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.61 | 46.0 | 3.94e-01 | 82.0% | 53.1% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.60 | 50.0 | 4.03e-01 | 94.0% | 47.9% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.60 | 40.0 | 2.86e-01 | 86.0% | 19.9% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 44.0 | 3.53e-01 | 78.0% | 79.8% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 46.0 | 3.10e-01 | 84.0% | 34.4% |
| 5cygB00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.58 | 44.0 | 2.80e-01 | 84.0% | 86.1% |
| 3pieC05 | 2.170.260.40 | Mainly Beta › Beta Complex › paz domain › | 0.57 | 42.0 | 2.91e-01 | 80.0% | 43.1% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.56 | 37.0 | 4.24e-01 | 70.0% | 100.0% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.56 | 46.0 | 2.78e-01 | 90.0% | 30.4% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.56 | 46.0 | 3.17e-01 | 92.0% | 57.6% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.56 | 39.0 | 3.43e-01 | 74.0% | 51.9% |
| 3euoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 40.0 | 2.87e-01 | 78.0% | 40.1% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 38.0 | 3.26e-01 | 74.0% | 46.2% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 2.98e-01 | 74.0% | 100.0% |
| 1dikA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 38.0 | 2.86e-01 | 82.0% | 88.9% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.52 | 36.0 | 3.60e-01 | 76.0% | 83.6% |
| 6ziwI01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.31e-01 | 78.0% | 52.6% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.63e-01 | 100.0% | 87.7% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 43.0 | 3.37e-01 | 92.0% | 52.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065366 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.94 | 64.0 | 4.63e-01 | 70.0% | 29.2% |
| 4025349 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.83 | 64.0 | 4.61e-01 | 82.0% | 53.8% |
| 3920672 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.81 | 60.0 | 4.81e-01 | 86.0% | 43.3% |
| 4934384 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.80 | 57.0 | 4.74e-01 | 76.0% | 54.1% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.79 | 65.0 | 4.81e-01 | 88.0% | 42.6% |
| 3998700 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.78 | 56.0 | 4.74e-01 | 76.0% | 73.8% |
| 3208120 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.76 | 62.0 | 4.35e-01 | 90.0% | 71.6% |
| 3684015 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 62.0 | 4.76e-01 | 90.0% | 45.0% |
| 3968902 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.73 | 55.0 | 3.43e-01 | 80.0% | 20.8% |
| 4418050 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 66.0 | 3.86e-01 | 100.0% | 18.2% |
| 3789547 | 859.1.1.3 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 | 0.69 | 57.0 | 3.94e-01 | 92.0% | 84.6% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.69 | 63.0 | 4.30e-01 | 96.0% | 38.0% |
| 4363811 | 230.4.1.2 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › AbpE_bact | 0.68 | 53.0 | 4.10e-01 | 88.0% | 37.5% |
| 3598612 | 220.1.1.230 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 | 0.68 | 49.0 | 3.94e-01 | 76.0% | 44.4% |
| 3257763 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.67 | 46.0 | 2.71e-01 | 72.0% | 97.7% |
| 4002410 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.67 | 60.0 | 4.15e-01 | 98.0% | 33.3% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 43.0 | 4.04e-01 | 70.0% | 75.4% |
| 3944499 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.64 | 45.0 | 3.72e-01 | 74.0% | 52.9% |
| 5043892 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.64 | 51.0 | 5.30e-01 | 90.0% | 100.0% |
| 3516025 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.63 | 52.0 | 4.08e-01 | 94.0% | 42.9% |
| 4939406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 58.0 | 3.84e-01 | 100.0% | 68.0% |
| 4279367 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 47.0 | 4.01e-01 | 80.0% | 52.5% |
| 3925496 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 43.0 | 3.51e-01 | 78.0% | 46.7% |
| 3929748 | 109.4.1.1303 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C | 0.57 | 44.0 | 2.70e-01 | 86.0% | 31.3% |
| 3581101 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 46.0 | 3.13e-01 | 94.0% | 63.5% |
| 5078945 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.51 | 34.0 | 3.17e-01 | 76.0% | 53.8% |