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5H_04062016_scaffold_1_prodigal-single.1__X__X__00376

Bact-Vir

5H_04062016_scaffold_1_prodigal-single.1__X__X__00376

Identity

Kingdom:
phage

Quality

94.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 67.0 5.68e-01 94.0% 63.1%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.79 64.0 6.21e-01 94.0% 94.8%
1whuA00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.79 67.0 5.28e-01 96.0% 65.4%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 5.25e-01 94.0% 61.2%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 5.33e-01 94.0% 75.6%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.50e-01 98.0% 74.7%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.74 63.0 5.77e-01 100.0% 82.4%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.74 64.0 6.02e-01 100.0% 88.5%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.72 57.0 4.58e-01 100.0% 43.1%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.71 62.0 5.04e-01 100.0% 55.7%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.71 58.0 5.13e-01 100.0% 74.1%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.70 58.0 4.23e-01 96.0% 44.8%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.77e-01 96.0% 71.6%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 4.78e-01 94.0% 78.0%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.69 57.0 5.17e-01 100.0% 85.1%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.69 58.0 5.12e-01 100.0% 78.2%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.69 57.0 5.33e-01 96.0% 79.7%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.55e-01 92.0% 52.7%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.05e-01 94.0% 89.6%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.68 47.0 4.23e-01 76.0% 53.7%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 4.63e-01 94.0% 77.6%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.68 55.0 4.68e-01 98.0% 61.1%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.67 57.0 4.83e-01 100.0% 59.6%
8gccA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.66 54.0 4.43e-01 100.0% 56.7%
1ignA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 53.0 4.47e-01 98.0% 81.7%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 5.06e-01 100.0% 77.6%
4gnrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 56.0 3.70e-01 100.0% 70.1%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.62 44.0 3.30e-01 78.0% 34.7%
4q6bA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 46.0 3.11e-01 82.0% 25.4%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.61 45.0 4.08e-01 78.0% 78.8%
2h5nC00 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.61 52.0 3.99e-01 100.0% 40.3%
2lrdA00 1.10.10.1840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 45.0 4.32e-01 92.0% 72.1%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 52.0 3.24e-01 100.0% 60.1%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 49.0 3.04e-01 96.0% 61.6%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 47.0 3.86e-01 88.0% 55.8%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.57 41.0 3.89e-01 76.0% 69.0%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 49.0 3.10e-01 100.0% 25.1%
1iufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 44.0 4.02e-01 94.0% 66.2%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 44.0 3.81e-01 84.0% 94.9%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 2.97e-01 78.0% 38.9%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.55 48.0 3.66e-01 96.0% 62.5%
1wj7A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 45.0 4.26e-01 96.0% 76.7%
5l0wB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 45.0 3.34e-01 100.0% 42.0%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.47e-01 88.0% 55.3%
3opbA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 44.0 2.61e-01 100.0% 22.5%
4ww7B00 3.30.2380.10 Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB 0.51 41.0 2.86e-01 88.0% 52.9%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5072473 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 69.0 5.97e-01 100.0% 72.5%
3993576 610.3.1.3 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.80 68.0 4.76e-01 98.0% 34.5%
3504507 610.3.1.3 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.80 68.0 4.61e-01 98.0% 30.3%
4025625 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 6.18e-01 100.0% 84.1%
4998572 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 5.75e-01 100.0% 61.2%
3938065 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 5.67e-01 94.0% 74.7%
4304583 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 5.93e-01 96.0% 84.6%
3224625 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.77 65.0 5.82e-01 100.0% 76.0%
3573598 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.77 67.0 5.20e-01 100.0% 57.3%
4932388 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.75 61.0 5.52e-01 98.0% 73.3%
5012106 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.75 60.0 4.50e-01 94.0% 46.7%
4999149 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.74 62.0 4.56e-01 98.0% 47.9%
3697342 101.1.2.33 alpha arrays › HTH › HTH › winged helix domain › TFIIE_beta 0.74 62.0 5.51e-01 98.0% 70.7%
5049455 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.73 58.0 4.35e-01 94.0% 44.3%
3598925 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.73 56.0 4.15e-01 84.0% 33.1%
5082043 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.73 58.0 4.36e-01 94.0% 46.4%
3928777 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.73 62.0 4.92e-01 100.0% 57.3%
3573652 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.95e-01 96.0% 98.0%
5003985 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.73 60.0 4.50e-01 98.0% 55.6%
3286911 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.55e-01 100.0% 87.1%
3956565 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.73 60.0 5.19e-01 100.0% 64.7%
3880787 101.1.2.526 alpha arrays › HTH › HTH › winged helix domain › PF27602 0.73 61.0 4.87e-01 100.0% 51.8%
3279756 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.72 60.0 4.47e-01 100.0% 40.0%
4988076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 5.57e-01 98.0% 85.3%
5032747 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.72 59.0 4.62e-01 96.0% 46.1%
5005264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 4.26e-01 100.0% 29.7%
4640327 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.72 60.0 4.55e-01 100.0% 50.8%
5053497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 58.0 5.51e-01 92.0% 90.0%
3983569 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.72 58.0 4.18e-01 96.0% 39.4%
3672635 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.71 60.0 5.35e-01 98.0% 69.3%
4236554 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 58.0 5.63e-01 100.0% 88.3%
None 0.71 58.0 4.48e-01 100.0% 43.4%
4932241 2007.1.2.56 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF116 0.71 58.0 4.07e-01 98.0% 27.8%
4008378 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 58.0 5.76e-01 100.0% 94.5%
3504540 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 57.0 5.66e-01 100.0% 94.5%
4957413 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 57.0 5.72e-01 98.0% 100.0%
5038626 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.70 56.0 4.14e-01 94.0% 45.5%
3987405 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.70 57.0 4.91e-01 100.0% 56.7%
3970076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.59e-01 98.0% 100.0%
4437630 3705.1.1.0 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) 0.70 59.0 5.37e-01 100.0% 81.4%
4464648 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.70 57.0 5.38e-01 100.0% 80.0%
3781503 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 56.0 5.52e-01 92.0% 90.9%
3612836 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 58.0 5.55e-01 96.0% 96.7%
3901969 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.30e-01 96.0% 78.5%
3713052 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.70 60.0 4.20e-01 100.0% 32.9%
4252854 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.69 58.0 5.16e-01 98.0% 81.3%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 58.0 5.60e-01 100.0% 96.7%
4381449 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.32e-01 100.0% 81.4%
3983493 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 55.0 5.60e-01 96.0% 100.0%
5074442 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.69 57.0 4.30e-01 100.0% 40.7%
4983598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 4.97e-01 90.0% 84.6%
4145524 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.68 55.0 5.24e-01 100.0% 81.5%
3890162 101.1.2.526 alpha arrays › HTH › HTH › winged helix domain › PF27602 0.68 57.0 5.11e-01 100.0% 73.3%
3473498 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 4.72e-01 94.0% 65.9%
3243495 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.67 55.0 5.39e-01 98.0% 90.9%
4975992 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 51.0 4.11e-01 82.0% 63.2%
3314194 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.67 57.0 4.95e-01 100.0% 81.2%
3942167 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 55.0 5.27e-01 100.0% 85.0%
4966184 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 54.0 4.58e-01 100.0% 88.4%
3424720 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.66 54.0 4.31e-01 100.0% 48.7%
3239718 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 4.96e-01 98.0% 73.8%
4397698 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.65 54.0 4.22e-01 100.0% 49.2%
3323413 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.65 43.0 3.72e-01 70.0% 42.4%
4938496 103.17.1.0 alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.64 42.0 4.16e-01 72.0% 61.8%
4944537 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 4.82e-01 100.0% 81.4%
3255275 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 50.0 4.85e-01 96.0% 95.0%
3419147 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 42.0 3.57e-01 70.0% 41.1%
3491886 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 42.0 3.76e-01 70.0% 56.0%
4987508 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.62 42.0 3.66e-01 80.0% 46.7%
4114693 5041.1.1.28 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26135 0.62 42.0 3.89e-01 76.0% 52.9%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.61 48.0 4.50e-01 94.0% 86.2%
3977558 639.2.1.3 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.61 46.0 4.53e-01 86.0% 98.2%
3238821 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.60 40.0 3.54e-01 72.0% 44.7%
5017110 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 44.0 3.81e-01 82.0% 67.5%
3926773 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.57 45.0 3.89e-01 100.0% 63.2%