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5H_04062016_scaffold_1_prodigal-single.1__X__X__00379

Bact-Vir

5H_04062016_scaffold_1_prodigal-single.1__X__X__00379

Identity

Kingdom:
phage

Quality

92.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-67
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 51.0 4.98e-01 85.5% 81.2%
1aa7A02 1.10.10.180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 0.65 53.0 4.98e-01 98.4% 73.1%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 45.0 3.32e-01 75.8% 91.0%
3qcpA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 50.0 3.68e-01 87.1% 81.9%
2zb4A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 44.0 3.22e-01 88.7% 26.0%
2db0B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 54.0 3.64e-01 100.0% 40.4%
1wkbA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 47.0 2.89e-01 90.3% 12.9%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 46.0 3.59e-01 88.7% 59.1%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.43e-01 90.3% 86.1%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 45.0 3.68e-01 87.1% 100.0%
3ripA02 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.57 47.0 3.09e-01 93.5% 25.1%
4b3lA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 46.0 2.84e-01 100.0% 19.5%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.54 47.0 3.35e-01 100.0% 56.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3494018 137.1.1.1 ↗ alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › bZIP_Maf 0.74 52.0 5.36e-01 96.8% 78.3%
3931961 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 54.0 5.80e-01 96.8% 100.0%
4989143 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 43.0 3.52e-01 90.3% 33.6%
4260102 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 51.0 3.04e-01 91.9% 10.9%
3921064 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 51.0 2.96e-01 93.5% 8.6%
4838669 529.1.1.1 ↗ few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › ANATO 0.69 50.0 4.81e-01 93.5% 66.7%
None — 0.67 43.0 4.43e-01 83.9% 68.3%
4963279 101.1.4.92 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF5791 0.65 40.0 3.89e-01 85.5% 55.1%
4369849 516.1.1.1 ↗ alpha arrays › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › Sdh5 0.61 41.0 3.79e-01 88.7% 53.8%
4146098 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.60 37.0 3.53e-01 83.9% 52.0%
3166770 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.59 49.0 3.68e-01 95.2% 56.4%
3693900 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.58 46.0 4.01e-01 100.0% 55.6%
3522050 109.3.1.131 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › INT_SG_DDX_CT_C 0.58 47.0 4.49e-01 100.0% 77.0%
4164317 2488.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › tRNA_m1G_MT 0.57 50.0 3.26e-01 96.8% 31.6%
5013621 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.57 44.0 3.06e-01 90.3% 23.3%
3963955 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.56 35.0 3.53e-01 83.9% 61.5%
5073312 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.53 42.0 2.98e-01 93.5% 25.7%
1519847 7523.1.1.8 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.53 41.0 3.11e-01 88.7% 93.6%
4420776 3492.1.1.1 ↗ a+b two layers › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › MukE 0.53 40.0 2.90e-01 88.7% 43.2%
3864955 633.22.1.6 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › TMD0_ABC 0.52 44.0 3.23e-01 95.2% 54.7%