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5H_04062016_scaffold_1_prodigal-single.1__X__X__00397

Bact-Vir

5H_04062016_scaffold_1_prodigal-single.1__X__X__00397

Identity

Kingdom:
phage

Quality

86.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-137
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6pG00 6.10.140.1660 Special › Helix non-globular › Helix Hairpins › 0.64 27.0 2.98e-01 98.9% 44.4%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.23e-01 84.6% 100.0%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 5.07e-01 83.5% 98.8%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 44.0 3.52e-01 79.1% 91.2%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.46e-01 84.6% 88.3%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.50e-01 90.1% 82.1%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.44e-01 87.9% 93.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.43e-01 84.6% 85.0%
2bx9A00 6.20.20.10 Special › Other non-globular › Chaperone, DNAj Protein; Chain A › 0.58 32.0 4.16e-01 80.2% 94.3%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.19e-01 91.2% 64.2%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.13e-01 90.1% 74.6%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.75e-01 91.2% 95.6%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.61e-01 97.8% 81.0%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.39e-01 83.5% 89.6%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.31e-01 93.4% 81.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.62e-01 94.5% 89.5%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 3.94e-01 91.2% 53.8%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.63e-01 100.0% 79.8%
2rkhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.60e-01 98.9% 92.0%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.39e-01 76.9% 94.8%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.39e-01 86.8% 87.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 48.0 4.63e-01 98.9% 85.4%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.55e-01 97.8% 83.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.26e-01 98.9% 74.1%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 44.0 3.78e-01 93.4% 61.0%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.53 47.0 3.95e-01 98.9% 83.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 4.30e-01 96.7% 77.4%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.31e-01 93.4% 95.2%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 42.0 4.00e-01 89.0% 76.3%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 4.15e-01 84.6% 91.4%
2dchX01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 42.0 4.25e-01 89.0% 89.2%
1m0sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 36.0 3.95e-01 78.0% 90.3%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 4.55e-01 97.8% 97.8%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 37.0 3.33e-01 75.8% 82.5%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 4.53e-01 98.9% 95.6%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 42.0 3.56e-01 93.4% 60.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032552 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 5.45e-01 100.0% 96.4%
5062171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.44e-01 92.3% 88.7%
5077595 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 4.27e-01 76.9% 73.6%
3645708 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 52.0 4.84e-01 93.4% 97.4%
4969597 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.30e-01 87.9% 76.6%
5058727 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 4.74e-01 100.0% 91.7%
3602364 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.61 48.0 4.85e-01 83.5% 97.8%
3662216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 3.76e-01 97.8% 58.2%
4167796 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 52.0 4.00e-01 96.7% 64.2%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 4.67e-01 76.9% 100.0%
5070036 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.49e-01 98.9% 88.7%
4998602 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.02e-01 96.7% 63.9%
4926994 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.60 48.0 4.59e-01 86.8% 84.6%
3802262 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 50.0 4.44e-01 96.7% 92.9%
2725264 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 45.0 3.66e-01 82.4% 42.2%
4950221 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 47.0 4.46e-01 85.7% 87.0%
4998735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.54e-01 97.8% 77.0%
5040012 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.59 46.0 4.69e-01 84.6% 90.0%
4979815 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.59 46.0 4.63e-01 83.5% 93.3%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 49.0 4.67e-01 94.5% 100.0%
4963008 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.59e-01 82.4% 87.8%
4998580 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.58e-01 84.6% 92.2%
4107533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 45.0 4.09e-01 86.8% 74.6%
5053457 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 51.0 3.97e-01 98.9% 47.2%
4955611 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 48.0 4.61e-01 92.3% 92.3%
4979194 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.42e-01 83.5% 85.3%
4976773 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.57 43.0 4.09e-01 81.3% 73.6%
5010704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.21e-01 93.4% 77.9%
3587894 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.57 46.0 3.74e-01 87.9% 89.1%
4943784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.38e-01 95.6% 76.0%
4420479 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.56 50.0 4.83e-01 100.0% 87.6%
4959599 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 50.0 4.66e-01 100.0% 82.5%
3286725 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 47.0 3.78e-01 93.4% 83.2%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.15e-01 91.2% 93.8%
5001284 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 49.0 4.11e-01 100.0% 56.2%
4996670 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.34e-01 82.4% 95.6%
4625648 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 50.0 4.69e-01 98.9% 83.5%
4959456 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 49.0 4.01e-01 100.0% 52.9%
5035522 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 44.0 4.20e-01 84.6% 83.8%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 45.0 3.62e-01 90.1% 68.6%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 48.0 4.63e-01 98.9% 85.4%
4264020 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.55 45.0 4.35e-01 90.1% 77.1%
5035685 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 49.0 4.42e-01 98.9% 74.2%
5051882 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.55 46.0 4.34e-01 91.2% 78.2%
4999286 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 45.0 3.65e-01 90.1% 86.1%
4944051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 3.98e-01 100.0% 80.6%
3725361 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 4.82e-01 100.0% 100.0%
4971941 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 42.0 4.52e-01 90.1% 100.0%
5079768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.54e-01 100.0% 96.4%
4947503 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 48.0 4.00e-01 100.0% 58.1%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 48.0 4.67e-01 98.9% 91.0%
5046461 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 47.0 3.67e-01 97.8% 44.5%
5072114 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 48.0 4.08e-01 100.0% 60.7%
3289681 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 45.0 3.51e-01 91.2% 49.7%
169883 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.54 44.0 3.78e-01 93.4% 61.0%
3280086 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 44.0 3.54e-01 90.1% 56.1%
5061948 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 47.0 4.07e-01 100.0% 66.0%
4425403 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 46.0 4.41e-01 95.6% 85.4%
4978090 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 45.0 3.44e-01 94.5% 80.5%
5071263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.56e-01 100.0% 96.7%
4330486 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 47.0 4.23e-01 98.9% 75.8%
5077851 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 44.0 3.79e-01 94.5% 76.0%
5071269 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 43.0 3.41e-01 100.0% 41.4%
3403404 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.52 33.0 3.52e-01 75.8% 73.8%
3988732 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 43.0 4.07e-01 97.8% 77.8%
4943526 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.52 45.0 3.83e-01 98.9% 80.5%
3820871 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 45.0 4.04e-01 100.0% 88.5%
3956796 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.51 43.0 3.45e-01 93.4% 58.4%
3272247 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 41.0 3.66e-01 94.5% 86.9%
4275014 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.50 39.0 3.68e-01 85.7% 94.8%