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5H_04062016_scaffold_1_prodigal-single.1__X__X__00405
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00405
Identity
- Kingdom:
- phage
Quality
78.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-67
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 42.0 | 4.03e-01 | 70.8% | 52.0% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.67 | 41.0 | 3.54e-01 | 84.6% | 39.4% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.64 | 41.0 | 4.51e-01 | 80.0% | 84.3% |
| 5b7gA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.62 | 44.0 | 2.98e-01 | 95.4% | 20.1% |
| 3eeiA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.62 | 43.0 | 2.93e-01 | 90.8% | 20.8% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 41.0 | 4.21e-01 | 86.2% | 73.8% |
| 1gkuB05 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 41.0 | 3.36e-01 | 90.8% | 39.7% |
| 1wfwA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 38.0 | 3.68e-01 | 96.9% | 59.5% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.56 | 40.0 | 3.35e-01 | 75.4% | 58.3% |
| 3tixB01 | 2.40.290.20 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.55 | 47.0 | 3.71e-01 | 98.5% | 85.8% |
| 2otrA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.54 | 38.0 | 3.52e-01 | 76.9% | 77.8% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.54 | 39.0 | 2.56e-01 | 78.5% | 17.5% |
| 2r0cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 43.0 | 2.95e-01 | 90.8% | 50.6% |
| 2m1cA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 40.0 | 3.36e-01 | 83.1% | 80.5% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.52 | 41.0 | 3.77e-01 | 87.7% | 67.9% |
| 4cy8A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 2.75e-01 | 87.7% | 59.3% |
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.51 | 35.0 | 2.94e-01 | 78.5% | 38.8% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.51 | 36.0 | 3.25e-01 | 75.4% | 67.4% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 38.0 | 3.82e-01 | 80.0% | 84.6% |
| 3kljA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 37.0 | 3.49e-01 | 84.6% | 62.7% |
| 4gakA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 39.0 | 2.72e-01 | 87.7% | 75.2% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.50 | 34.0 | 3.31e-01 | 100.0% | 63.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942912 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.69 | 43.0 | 3.96e-01 | 84.6% | 48.2% |
| 4973804 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 41.0 | 3.98e-01 | 73.8% | 53.3% |
| 4636455 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.66 | 42.0 | 4.77e-01 | 70.8% | 95.6% |
| 3504386 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.64 | 38.0 | 3.71e-01 | 100.0% | 54.3% |
| 5077064 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.62 | 48.0 | 3.13e-01 | 86.2% | 30.8% |
| 3519410 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.62 | 37.0 | 4.49e-01 | 100.0% | 100.0% |
| 5061515 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 48.0 | 4.12e-01 | 87.7% | 72.4% |
| 3319159 | 284.2.1.1 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 | 0.60 | 47.0 | 3.67e-01 | 86.2% | 69.7% |
| 4537304 | 11.1.1.279 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C1 | 0.59 | 52.0 | 4.07e-01 | 100.0% | 91.7% |
| 4329624 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.59 | 43.0 | 3.64e-01 | 87.7% | 47.6% |
| 4172303 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.57 | 41.0 | 3.35e-01 | 76.9% | 68.8% |
| 3214958 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.57 | 39.0 | 2.57e-01 | 72.3% | 76.0% |
| 4883391 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.56 | 30.0 | 2.73e-01 | 100.0% | 34.4% |
| 3233944 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.56 | 33.0 | 3.91e-01 | 98.5% | 97.5% |
| 3998976 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.55 | 36.0 | 4.09e-01 | 100.0% | 95.6% |
| 4991121 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 41.0 | 3.48e-01 | 81.5% | 76.5% |
| 5077119 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 40.0 | 3.04e-01 | 75.4% | 50.0% |
| 4998154 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 39.0 | 3.08e-01 | 73.8% | 60.0% |
| 5078349 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 46.0 | 3.32e-01 | 95.4% | 32.1% |
| 3399130 | 7524.1.1.4 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › DUF1487 | 0.55 | 43.0 | 2.96e-01 | 86.2% | 93.5% |
| 3898522 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 36.0 | 3.92e-01 | 72.3% | 88.0% |
| 5028178 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.55 | 44.0 | 3.13e-01 | 89.2% | 91.7% |
| 4932673 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.54 | 39.0 | 3.59e-01 | 83.1% | 56.7% |
| 3891793 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.54 | 42.0 | 2.85e-01 | 90.8% | 24.0% |
| 4202852 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.54 | 39.0 | 3.39e-01 | 76.9% | 84.8% |
| 3509056 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.54 | 35.0 | 2.86e-01 | 96.9% | 34.4% |
| 4079885 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.54 | 38.0 | 3.34e-01 | 100.0% | 50.5% |
| 4016933 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.54 | 40.0 | 3.63e-01 | 86.2% | 55.8% |
| 5008603 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 39.0 | 2.88e-01 | 80.0% | 45.8% |
| 5036656 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 37.0 | 3.86e-01 | 78.5% | 78.3% |
| 3931122 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 39.0 | 3.45e-01 | 78.5% | 60.0% |
| 3940690 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 39.0 | 3.37e-01 | 78.5% | 94.3% |
| 4029963 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.53 | 40.0 | 3.40e-01 | 83.1% | 47.0% |
| 3468562 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.53 | 36.0 | 3.32e-01 | 72.3% | 71.1% |
| 3698579 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.53 | 39.0 | 3.34e-01 | 80.0% | 80.0% |
| 3196528 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 36.0 | 3.81e-01 | 100.0% | 78.3% |
| 3937820 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 3.42e-01 | 73.8% | 90.6% |
| 4316228 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.52 | 41.0 | 3.57e-01 | 100.0% | 55.2% |
| 3928706 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.52 | 37.0 | 2.83e-01 | 76.9% | 58.2% |
| 4027836 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.51 | 42.0 | 3.26e-01 | 92.3% | 50.7% |
| 4943638 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 42.0 | 3.04e-01 | 100.0% | 29.5% |
| 3935357 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 38.0 | 3.17e-01 | 81.5% | 54.2% |
| 4028321 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 35.0 | 2.64e-01 | 75.4% | 41.6% |