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5H_04062016_scaffold_1_prodigal-single.1__X__X__00419
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00419
Identity
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-30_122-144
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4epkB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.64 | 47.0 | 2.92e-01 | 81.1% | 31.5% |
| 4abyD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 46.0 | 2.81e-01 | 94.3% | 13.5% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.60 | 42.0 | 3.52e-01 | 81.1% | 42.1% |
| 6qssB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.59 | 52.0 | 3.70e-01 | 100.0% | 99.4% |
| 1tufA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.55 | 40.0 | 2.84e-01 | 79.2% | 69.7% |
| 6z0pB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 2.87e-01 | 100.0% | 36.8% |
| 7yugA01 | 1.10.10.2590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain | 0.50 | 46.0 | 3.53e-01 | 100.0% | 59.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3928936 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.63 | 46.0 | 3.56e-01 | 92.5% | 35.7% |
| 4977919 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.63 | 47.0 | 3.76e-01 | 81.1% | 89.5% |
| 1866557 | 873.1.1.2 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R,XylR_N | 0.58 | 46.0 | 3.16e-01 | 90.6% | 49.5% |
| 4171616 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.52 | 44.0 | 3.61e-01 | 100.0% | 52.4% |
| 3778748 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.51 | 38.0 | 2.58e-01 | 83.0% | 19.6% |
D2
medium
residues 31-121
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.60 | 35.0 | 3.32e-01 | 81.3% | 46.9% |
| 8d8lE01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 29.0 | 2.98e-01 | 90.1% | 50.0% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.56 | 26.0 | 3.15e-01 | 87.9% | 66.1% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 26.0 | 3.23e-01 | 100.0% | 75.0% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 28.0 | 2.80e-01 | 96.7% | 48.9% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 26.0 | 3.02e-01 | 100.0% | 62.7% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.53 | 27.0 | 3.15e-01 | 91.2% | 68.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 29.0 | 3.59e-01 | 100.0% | 58.3% |
| 3216714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 25.0 | 3.86e-01 | 94.5% | 82.9% |
| 3970659 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 26.0 | 3.18e-01 | 96.7% | 58.3% |
| 3242941 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 38.0 | 4.30e-01 | 100.0% | 90.0% |
| 3680934 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 24.0 | 3.35e-01 | 100.0% | 87.5% |
| 4052370 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 33.0 | 3.81e-01 | 100.0% | 86.2% |
| 4072904 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 25.0 | 3.20e-01 | 97.8% | 76.4% |
| 4946191 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 38.0 | 4.10e-01 | 100.0% | 87.2% |
| 4408024 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.52 | 28.0 | 3.48e-01 | 100.0% | 81.7% |