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5H_04062016_scaffold_1_prodigal-single.1__X__X__00426

Bact-Vir

5H_04062016_scaffold_1_prodigal-single.1__X__X__00426

Identity

Kingdom:
phage

Quality

66.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 265-368
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 50.0 6.13e-01 77.9% 92.5%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 55.0 6.05e-01 80.8% 81.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 50.0 6.22e-01 77.9% 100.0%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 58.0 6.43e-01 94.2% 92.7%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 52.0 5.83e-01 78.8% 82.9%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 55.0 6.34e-01 85.6% 97.3%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 50.0 6.10e-01 88.5% 100.0%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 50.0 5.41e-01 76.9% 75.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 60.0 5.98e-01 91.3% 78.1%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 6.55e-01 88.5% 100.0%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 6.13e-01 81.7% 98.7%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 47.0 5.74e-01 77.9% 100.0%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 5.86e-01 90.4% 86.7%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 6.06e-01 80.8% 100.0%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 49.0 5.32e-01 80.8% 79.3%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.41e-01 81.7% 83.5%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.14e-01 91.3% 59.4%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.86e-01 81.7% 100.0%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.95e-01 87.5% 93.4%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 5.24e-01 94.2% 80.4%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.90e-01 87.5% 89.8%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.54e-01 91.3% 82.5%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.88e-01 88.5% 98.8%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 5.26e-01 92.3% 70.1%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.69 53.0 5.81e-01 84.6% 100.0%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 49.0 5.09e-01 78.8% 81.1%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 43.0 4.76e-01 87.5% 81.5%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.41e-01 97.1% 79.2%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 5.21e-01 82.7% 97.3%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.25e-01 89.4% 55.4%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.61e-01 88.5% 59.5%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.65 50.0 4.78e-01 81.7% 81.3%
7kw8A01 1.10.10.970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain 0.64 44.0 5.05e-01 78.8% 100.0%
3rsnA00 3.90.980.20 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › 0.63 54.0 4.70e-01 95.2% 66.1%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.74e-01 91.3% 73.3%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 5.35e-01 98.1% 95.8%
2krhA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.62 41.0 4.48e-01 75.0% 83.5%
1v3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.63e-01 84.6% 85.8%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.60 44.0 4.52e-01 84.6% 82.2%
6n9gA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.88e-01 95.2% 96.0%
4f52C02 3.30.230.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 0.57 53.0 4.54e-01 100.0% 88.7%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 31.0 3.47e-01 74.0% 67.5%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 40.0 4.40e-01 93.3% 96.4%
2l1iA00 3.30.70.2330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.77e-01 76.0% 96.7%
2bcfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 37.0 2.80e-01 70.2% 57.9%
2zy2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.66e-01 85.6% 62.1%
2djwA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.51 31.0 3.57e-01 72.1% 83.8%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 37.0 3.53e-01 76.0% 63.9%
3if2A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 42.0 2.84e-01 93.3% 61.1%
5w0hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 29.0 3.18e-01 70.2% 70.0%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 31.0 3.50e-01 74.0% 81.2%
1u08A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 36.0 3.30e-01 83.7% 55.6%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285394 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.82 59.0 6.61e-01 95.2% 96.2%
3250041 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.82 63.0 4.75e-01 84.6% 36.9%
4593646 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 6.38e-01 88.5% 87.8%
4120250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 56.0 6.28e-01 81.7% 91.3%
3989819 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.81 57.0 6.58e-01 85.6% 100.0%
4606139 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 59.0 6.66e-01 81.7% 97.5%
3587913 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.81 58.0 5.32e-01 89.4% 59.2%
4974951 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 61.0 6.39e-01 90.4% 88.4%
3571824 101.1.2.601 alpha arrays › HTH › HTH › winged helix domain › TBPIP, LZ3wCH 0.78 54.0 4.18e-01 85.6% 34.4%
3971896 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 57.0 6.45e-01 90.4% 100.0%
4930418 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.77 57.0 5.92e-01 93.3% 83.2%
5027342 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 60.0 6.25e-01 95.2% 90.5%
3280969 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.76 57.0 5.88e-01 90.4% 82.0%
4990676 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.76 64.0 6.31e-01 89.4% 88.2%
5049515 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 64.0 6.17e-01 89.4% 83.5%
5050129 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 64.0 6.26e-01 89.4% 89.1%
4989321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 52.0 5.95e-01 86.5% 98.7%
5021067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.58e-01 93.3% 76.2%
3225058 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.75 68.0 4.72e-01 99.0% 34.5%
3953464 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 54.0 5.92e-01 93.3% 91.8%
4943364 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.91e-01 89.4% 78.0%
3773922 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.74 50.0 4.45e-01 85.6% 48.7%
3269500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 52.0 5.40e-01 82.7% 77.8%
5016560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 55.0 5.78e-01 90.4% 86.3%
4955909 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 62.0 6.10e-01 89.4% 87.3%
4975635 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 4.57e-01 80.8% 46.3%
4034554 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.73 52.0 5.88e-01 81.7% 95.0%
3901071 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.73 66.0 5.10e-01 100.0% 59.1%
4961270 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 61.0 6.13e-01 89.4% 90.5%
4948099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 6.00e-01 89.4% 89.1%
5081950 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.72 61.0 5.90e-01 89.4% 81.7%
421171 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.72 53.0 5.74e-01 88.5% 90.9%
3404571 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.72 51.0 5.65e-01 83.7% 95.0%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 4.54e-01 94.2% 45.9%
4004118 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.71 55.0 4.45e-01 94.2% 45.4%
None 0.71 55.0 4.49e-01 94.2% 45.9%
3321732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.63e-01 86.5% 86.0%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.70 55.0 4.47e-01 94.2% 45.9%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.70 55.0 4.42e-01 94.2% 44.7%
4310506 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.70 55.0 4.26e-01 83.7% 41.8%
3223233 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.70 55.0 4.15e-01 94.2% 37.0%
3590196 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.70 53.0 5.82e-01 87.5% 98.8%
3784677 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.70 54.0 4.20e-01 81.7% 40.9%
3394822 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.69 54.0 4.34e-01 94.2% 43.6%
4997255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.67e-01 93.3% 89.0%
5067132 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.27e-01 86.5% 74.8%
3927517 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 58.0 5.98e-01 89.4% 93.0%
5065308 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 62.0 5.89e-01 96.2% 90.0%
143797 101.1.2.149 alpha arrays › HTH › HTH › winged helix domain › Costars 0.69 51.0 5.71e-01 80.8% 100.0%
4190752 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.69 51.0 5.35e-01 89.4% 84.2%
3727445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.76e-01 97.1% 88.6%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 52.0 5.10e-01 87.5% 73.6%
3181298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.31e-01 97.1% 76.5%
3509319 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 4.96e-01 82.7% 94.6%
4999522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.25e-01 88.5% 74.8%
3809863 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.75e-01 86.5% 58.0%
4001659 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.68 51.0 4.28e-01 92.3% 47.4%
1167050 101.1.2.145 alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.67 50.0 4.52e-01 80.8% 56.6%
4991879 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.70e-01 93.3% 99.0%
5053793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.45e-01 89.4% 85.2%
3316941 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.67 57.0 5.51e-01 92.3% 81.7%
3830291 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.67 51.0 3.41e-01 86.5% 20.7%
3621839 4001.1.1.0 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins 0.67 52.0 4.59e-01 95.2% 56.7%
3889516 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.67 49.0 4.92e-01 79.8% 76.2%
3827266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 4.78e-01 86.5% 61.4%
4978826 873.1.1.18 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HTH_24 0.66 60.0 4.63e-01 97.1% 76.3%
3264027 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.38e-01 82.7% 93.3%
5000735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 4.26e-01 92.3% 48.0%
4659623 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.66 50.0 4.86e-01 92.3% 72.2%
4963760 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 5.25e-01 89.4% 89.5%
4991791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 5.62e-01 96.2% 100.0%
3422463 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.64 53.0 5.34e-01 89.4% 89.5%
3493458 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.64 51.0 4.47e-01 96.2% 58.0%
3383835 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.64 51.0 4.89e-01 89.4% 75.0%
5034596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.70e-01 92.3% 66.7%
4663141 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 43.0 4.13e-01 88.5% 60.8%
3611256 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.63 52.0 3.23e-01 97.1% 16.3%
4088893 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 43.0 3.62e-01 88.5% 41.7%
5044477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.94e-01 82.7% 89.0%
3167160 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 3.44e-01 96.2% 20.2%
3734764 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.59 49.0 3.49e-01 90.4% 52.9%
4491537 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 4.79e-01 100.0% 82.9%
3938950 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 39.0 3.46e-01 86.5% 52.7%
3977213 5051.1.1.5 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Na_Ala_symp 0.51 46.0 2.99e-01 100.0% 44.6%
4032850 5051.1.1.5 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Na_Ala_symp 0.51 46.0 2.95e-01 100.0% 43.2%
5018613 5051.1.1.5 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Na_Ala_symp 0.50 45.0 2.97e-01 100.0% 47.0%
D2 medium residues 1-127_225-262
PDB
D3 medium residues 128-224
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.82 63.0 6.03e-01 79.4% 71.6%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.81 74.0 5.83e-01 100.0% 51.5%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.78 50.0 4.71e-01 71.1% 55.2%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.77 61.0 5.73e-01 87.6% 69.2%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 53.0 5.02e-01 72.2% 67.8%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.76 66.0 4.94e-01 93.8% 87.0%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.75 57.0 6.01e-01 78.4% 96.6%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 52.0 5.06e-01 74.2% 64.2%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.75 54.0 5.91e-01 100.0% 90.0%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 63.0 4.65e-01 89.7% 37.7%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 62.0 4.83e-01 90.7% 50.7%
2j1dG01 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.74 58.0 3.78e-01 81.4% 46.8%
1kmiZ02 1.10.287.500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 61.0 5.42e-01 86.6% 85.1%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.74 57.0 6.21e-01 83.5% 95.1%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 56.0 4.36e-01 81.4% 48.3%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.72 51.0 4.33e-01 73.2% 46.5%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 65.0 5.43e-01 99.0% 96.2%
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 59.0 5.33e-01 93.8% 68.7%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 61.0 6.05e-01 96.9% 95.0%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 50.0 5.42e-01 80.4% 97.4%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 28.0 3.57e-01 88.7% 63.9%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.66 45.0 4.22e-01 72.2% 57.0%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.63 57.0 4.79e-01 100.0% 67.1%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.61 52.0 5.06e-01 92.8% 84.1%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.56 40.0 3.97e-01 73.2% 79.8%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 36.0 3.34e-01 73.2% 79.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4259224 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.91 76.0 6.29e-01 86.6% 56.1%
4516988 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.86 64.0 5.58e-01 81.4% 53.6%
3350514 3922.1.1.145 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › KIF21A_4th 0.85 69.0 5.72e-01 85.6% 56.9%
4126623 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 66.0 3.97e-01 83.5% 21.0%
4593595 3835.1.1.0 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein 0.82 75.0 5.70e-01 100.0% 56.4%
4001186 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 67.0 5.27e-01 86.6% 61.1%
4281985 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.81 75.0 6.59e-01 100.0% 74.3%
4547648 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.81 59.0 4.51e-01 75.3% 57.1%
3404270 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 75.0 6.70e-01 100.0% 73.8%
3520603 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.80 63.0 3.77e-01 82.5% 49.0%
3655688 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.80 66.0 5.32e-01 86.6% 60.6%
3437287 5086.1.1.199 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF31016 0.80 74.0 6.01e-01 100.0% 60.6%
3358852 3755.4.1.62 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF31016 0.79 74.0 6.23e-01 100.0% 68.4%
3211462 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 64.0 4.51e-01 84.5% 33.7%
3235839 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.79 61.0 4.95e-01 81.4% 49.7%
3867942 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.79 67.0 4.93e-01 90.7% 38.7%
3961547 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.78 58.0 5.79e-01 77.3% 76.0%
3267886 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.78 71.0 5.12e-01 99.0% 76.5%
3873518 3755.3.1.498 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF31016 0.78 71.0 6.25e-01 100.0% 74.3%
4076629 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.77 62.0 4.43e-01 85.6% 40.4%
3545963 3291.1.1.85 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF31016 0.77 71.0 6.30e-01 100.0% 77.0%
3959687 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.76 67.0 6.67e-01 97.9% 91.9%
4030523 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.75 66.0 5.02e-01 93.8% 61.9%
3337008 192.2.1.60 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th 0.75 60.0 5.31e-01 86.6% 70.0%
4300897 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.74 67.0 6.08e-01 99.0% 79.2%
4320014 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 58.0 4.14e-01 82.5% 29.6%
3403227 192.8.1.465 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 0.74 66.0 6.32e-01 97.9% 91.8%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.74 57.0 5.84e-01 79.4% 92.6%
3386718 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 62.0 5.21e-01 89.7% 88.1%
3973899 5086.1.1.92 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.74 68.0 5.88e-01 100.0% 85.5%
3624229 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.74 65.0 4.60e-01 95.9% 75.8%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 67.0 5.08e-01 97.9% 87.0%
3294656 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 65.0 4.29e-01 97.9% 59.6%
4660205 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 61.0 5.43e-01 90.7% 79.3%
3284573 150.5.1.11 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › T7SS_ESX_EspC 0.72 62.0 6.19e-01 97.9% 91.0%
5053017 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 66.0 5.77e-01 100.0% 87.1%
3730423 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.71 64.0 4.42e-01 97.9% 71.9%
3920125 3755.3.1.450 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uso1_p115_C 0.71 65.0 5.06e-01 97.9% 91.3%
3456370 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 54.0 4.60e-01 84.5% 51.6%
4001189 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 55.0 3.50e-01 86.6% 65.5%
4025636 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.67 59.0 5.07e-01 99.0% 60.1%
3212246 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.67 60.0 4.93e-01 99.0% 82.3%
3252533 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.67 55.0 4.26e-01 88.7% 79.5%
3298752 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.67 46.0 4.39e-01 75.3% 60.0%
3318812 192.8.1.248 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th 0.65 61.0 5.18e-01 100.0% 84.0%