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5H_04062016_scaffold_1_prodigal-single.1__X__X__00431
Bact-Vir5H_04062016_scaffold_1_prodigal-single.1__X__X__00431
Identity
- Kingdom:
- phage
Quality
73.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-76
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.85 | 71.0 | 6.43e-01 | 100.0% | 67.7% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.82 | 71.0 | 6.95e-01 | 100.0% | 87.3% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 74.0 | 6.58e-01 | 100.0% | 88.2% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.81 | 56.0 | 6.10e-01 | 100.0% | 83.9% |
| 5mdtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.80 | 57.0 | 4.41e-01 | 100.0% | 35.5% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.78 | 65.0 | 6.12e-01 | 100.0% | 75.3% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 69.0 | 6.20e-01 | 100.0% | 89.1% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 55.0 | 5.03e-01 | 75.3% | 89.6% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 65.0 | 5.85e-01 | 100.0% | 82.9% |
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 66.0 | 5.52e-01 | 100.0% | 72.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.73 | 67.0 | 5.79e-01 | 100.0% | 86.2% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.72 | 68.0 | 5.72e-01 | 100.0% | 73.7% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.72 | 63.0 | 5.34e-01 | 98.6% | 66.7% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.71 | 59.0 | 5.32e-01 | 100.0% | 66.7% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.71 | 65.0 | 5.46e-01 | 100.0% | 84.6% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 62.0 | 5.46e-01 | 98.6% | 93.5% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.70 | 63.0 | 6.16e-01 | 98.6% | 89.7% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.70 | 50.0 | 4.31e-01 | 74.0% | 49.1% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.70 | 65.0 | 5.59e-01 | 100.0% | 72.7% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.70 | 64.0 | 5.54e-01 | 100.0% | 84.4% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.69 | 59.0 | 5.24e-01 | 100.0% | 86.6% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 48.0 | 4.76e-01 | 74.0% | 70.5% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.68 | 59.0 | 4.90e-01 | 97.3% | 55.3% |
| 1qu7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.68 | 48.0 | 3.39e-01 | 74.0% | 28.6% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 59.0 | 5.16e-01 | 100.0% | 72.3% |
| 2zttA00 | 6.10.140.720 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 52.0 | 5.25e-01 | 87.7% | 80.8% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 58.0 | 5.24e-01 | 100.0% | 98.0% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 48.0 | 3.56e-01 | 95.9% | 29.9% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.67 | 61.0 | 5.43e-01 | 100.0% | 86.0% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 57.0 | 5.24e-01 | 100.0% | 90.1% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 53.0 | 5.31e-01 | 100.0% | 91.8% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 56.0 | 4.53e-01 | 100.0% | 52.0% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.63 | 48.0 | 3.92e-01 | 83.6% | 43.4% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.60 | 51.0 | 4.51e-01 | 100.0% | 63.4% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 53.0 | 4.19e-01 | 100.0% | 75.0% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.60 | 41.0 | 4.19e-01 | 71.2% | 75.3% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.59 | 47.0 | 3.89e-01 | 95.9% | 49.2% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.56 | 50.0 | 3.94e-01 | 100.0% | 67.3% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.55 | 43.0 | 3.71e-01 | 89.0% | 73.4% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 48.0 | 4.25e-01 | 100.0% | 75.0% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.53 | 45.0 | 3.98e-01 | 95.9% | 75.7% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054079 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.87 | 63.0 | 6.13e-01 | 80.8% | 68.8% |
| 3725377 | 192.15.1.44 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 | 0.87 | 60.0 | 5.52e-01 | 71.2% | 61.1% |
| 4944710 | 604.5.1.82 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TrkA_C | 0.82 | 74.0 | 6.70e-01 | 98.6% | 86.3% |
| 5078867 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.79 | 72.0 | 6.72e-01 | 100.0% | 86.7% |
| 3306390 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.79 | 70.0 | 6.19e-01 | 100.0% | 68.6% |
| 4996069 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.77 | 69.0 | 6.49e-01 | 100.0% | 82.2% |
| 4959593 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.77 | 55.0 | 4.35e-01 | 74.0% | 66.4% |
| 3497645 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.77 | 67.0 | 6.49e-01 | 100.0% | 87.5% |
| 3772121 | 632.7.1.19 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever | 0.77 | 52.0 | 4.83e-01 | 74.0% | 56.7% |
| 5046377 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.76 | 54.0 | 4.92e-01 | 74.0% | 56.8% |
| 4024800 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.76 | 68.0 | 5.36e-01 | 100.0% | 59.3% |
| 3191818 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.75 | 53.0 | 5.07e-01 | 74.0% | 64.7% |
| 3975170 | 2485.1.1.6 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP | 0.75 | 65.0 | 4.57e-01 | 100.0% | 90.0% |
| 4629385 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 52.0 | 4.08e-01 | 74.0% | 40.7% |
| 4076608 | 109.4.1.924 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CcmH_CycH | 0.73 | 49.0 | 3.24e-01 | 100.0% | 17.3% |
| 4626953 | 604.5.1.3 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C | 0.72 | 64.0 | 6.03e-01 | 100.0% | 86.7% |
| 4828003 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.72 | 67.0 | 5.53e-01 | 100.0% | 81.0% |
| 54292 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.71 | 66.0 | 5.57e-01 | 100.0% | 75.7% |
| 3420386 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.71 | 63.0 | 5.92e-01 | 100.0% | 83.3% |
| 4460268 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.71 | 65.0 | 4.71e-01 | 100.0% | 88.4% |
| 3957445 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.70 | 52.0 | 4.51e-01 | 84.9% | 51.3% |
| 3506760 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 48.0 | 4.01e-01 | 74.0% | 90.8% |
| 4936976 | 633.10.1.2 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Bbp7-like | 0.69 | 64.0 | 5.60e-01 | 100.0% | 78.1% |
| 5042312 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.68 | 60.0 | 5.13e-01 | 97.3% | 63.8% |
| 3200626 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.67 | 61.0 | 4.40e-01 | 100.0% | 90.0% |
| 3279105 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.67 | 60.0 | 3.93e-01 | 100.0% | 42.9% |
| 3947741 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.67 | 48.0 | 4.11e-01 | 76.7% | 58.3% |
| None | — | 0.65 | 44.0 | 2.97e-01 | 98.6% | 18.2% | |
| 3218651 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 56.0 | 5.47e-01 | 98.6% | 93.8% |
| 3596863 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.62 | 54.0 | 3.85e-01 | 100.0% | 39.1% |
| 3928667 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.60 | 51.0 | 4.78e-01 | 100.0% | 82.1% |
| 4022519 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.58 | 52.0 | 4.97e-01 | 100.0% | 87.1% |
| 5011834 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.56 | 47.0 | 4.58e-01 | 100.0% | 84.7% |