←Back to structures
5b_protein
Euk-VirInfectious_bronchitis_virus
5b_protein__YP_009825004__Infectious_bronchitis_virus__11120
Identity
- Accession:
- YP_009825004 ↗
- Protein ID:
- 5b_protein
- Kingdom:
- euk
Quality
67.0
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Gammacoronavirus›
Infectious_bronchitis_virus
TaxID: 11120
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-74
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05528.18 best | Acc5b_avian_CoV | 53.0 | 3.80e-14 | 100.0% | 80.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 39.0 | 3.07e-01 | 76.2% | 85.2% |
| 3glkA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 41.0 | 4.24e-01 | 90.5% | 91.5% |
| 1yc5A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.54 | 42.0 | 3.93e-01 | 90.5% | 77.4% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 42.0 | 3.86e-01 | 92.1% | 81.3% |
| 2rbkA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.54 | 45.0 | 3.89e-01 | 95.2% | 90.1% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.54 | 41.0 | 3.97e-01 | 90.5% | 93.5% |
| 2mdgA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 25.0 | 2.72e-01 | 98.4% | 49.1% |
| 2kkcA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 41.0 | 3.58e-01 | 87.3% | 78.0% |
| 1gpjA01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.52 | 39.0 | 3.14e-01 | 85.7% | 62.8% |
| 4o7iA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 37.0 | 2.69e-01 | 76.2% | 67.0% |
| 1rniA01 | 3.30.720.160 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal | 0.52 | 42.0 | 4.15e-01 | 95.2% | 94.3% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 37.0 | 2.90e-01 | 76.2% | 54.3% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.81e-01 | 90.5% | 79.5% |
| 3tiiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 39.0 | 3.95e-01 | 96.8% | 86.2% |
| 2cyjA00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.51 | 35.0 | 2.97e-01 | 74.6% | 93.2% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 43.0 | 3.82e-01 | 100.0% | 78.6% |
| 2hjhA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.50 | 40.0 | 3.41e-01 | 95.2% | 73.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4079232 | 3351.1.1.0 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 | 0.62 | 43.0 | 3.60e-01 | 71.4% | 83.6% |
| 3211717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 33.0 | 3.88e-01 | 73.0% | 91.4% |
| 5026532 | 242.2.1.1 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › DUF61 | 0.59 | 41.0 | 4.32e-01 | 73.0% | 87.3% |
| 4963987 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.56 | 47.0 | 3.27e-01 | 100.0% | 47.6% |
| 3523119 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.54 | 38.0 | 2.54e-01 | 77.8% | 72.7% |
| 3751549 | 375.1.1.18 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 | 0.53 | 38.0 | 3.74e-01 | 82.5% | 76.0% |
| 4943240 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.52 | 37.0 | 2.57e-01 | 74.6% | 58.2% |
| 4650888 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.52 | 43.0 | 3.05e-01 | 100.0% | 46.9% |
| 5037556 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 40.0 | 2.83e-01 | 88.9% | 78.4% |
| 5053864 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.51 | 41.0 | 3.16e-01 | 100.0% | 66.1% |