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65R

Euk-Vir

Yaba_monkey_tumor_virus

65R__NP_938320__Yaba_monkey_tumor_virus__38804

Identity

Accession:: NP_938320 ↗
Protein ID:: 65R
Kingdom:: euk

Quality

69.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba_monkey_tumor_virus

TaxID: 38804

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89_103-122

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03338.22 best	Pox_J1	137.7	3.70e-40	100.0%	80.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.72	37.0	3.69e-01	74.8%	49.1%
3rguB00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.61	35.0	3.87e-01	92.5%	69.0%
3ctwB00	1.10.8.930	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465	0.57	45.0	4.32e-01	91.6%	74.2%
3he0B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	40.0	3.43e-01	81.3%	92.7%
1iuqA01	1.10.1200.50	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal	0.52	32.0	3.66e-01	93.5%	84.2%
3himA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	39.0	3.35e-01	81.3%	96.3%
4ijjB00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.51	34.0	3.24e-01	99.1%	56.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2141248	531.3.1.1 ↗	alpha arrays › Domains of FliG › N-terminal domain of FliG › N-terminal domain of FliG › FliG_N	0.70	34.0	3.52e-01	89.7%	47.6%
3386338	531.2.1.1 ↗	alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG › FliG_M	0.66	32.0	3.47e-01	89.7%	53.3%
3505189	109.4.1.594 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Syndetin_C	0.63	46.0	3.58e-01	75.7%	69.1%
3630211	109.4.1.557 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC7_N	0.60	43.0	3.17e-01	73.8%	60.4%
3579590	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.60	36.0	3.30e-01	73.8%	45.7%
5076085	2484.1.1.302 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB	0.56	41.0	3.30e-01	75.7%	71.0%
3832368	109.4.1.361 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3	0.53	32.0	3.09e-01	86.0%	52.5%
4133066	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.52	39.0	3.00e-01	79.4%	79.6%
3482539	192.8.1.288 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Ada3	0.52	39.0	4.02e-01	100.0%	84.0%
3615064	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.52	38.0	3.75e-01	83.2%	71.3%
3186766	377.1.1.92 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LUC7	0.51	40.0	3.84e-01	81.3%	73.3%
None	—		0.51	38.0	3.01e-01	81.3%	84.5%