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6K1_protein

Euk-Vir

Cucumber_vein_yellowing_virus

6K1_protein__YP_308880__Cucumber_vein_yellowing_virus__137475

Identity

Accession:
YP_308880 ↗
Protein ID:
6K1_protein
Kingdom:
euk

Quality

75.1 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Ipomovirus› Cucumber_vein_yellowing_virus

TaxID: 137475

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-49
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.79 62.0 6.21e-01 87.8% 94.0%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.77 65.0 5.93e-01 100.0% 70.6%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.77 64.0 5.23e-01 95.9% 51.1%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.77 67.0 5.68e-01 100.0% 62.2%
3ilxA02 1.10.287.2170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 55.0 5.79e-01 85.7% 88.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 63.0 5.37e-01 100.0% 60.0%
5ejrA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.73 56.0 3.72e-01 89.8% 20.9%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.73 59.0 5.47e-01 93.9% 72.3%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.72 59.0 5.88e-01 95.9% 92.2%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 57.0 4.60e-01 98.0% 44.0%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.72 57.0 5.67e-01 91.8% 82.7%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.68 58.0 4.83e-01 100.0% 69.2%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.68 56.0 5.11e-01 100.0% 70.8%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.67 56.0 5.29e-01 100.0% 79.0%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 56.0 3.94e-01 100.0% 31.5%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.66 55.0 4.92e-01 100.0% 93.2%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 49.0 4.83e-01 85.7% 79.6%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.65 52.0 5.06e-01 100.0% 83.1%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.65 54.0 4.01e-01 100.0% 51.4%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.63 52.0 5.17e-01 95.9% 90.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946701 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 75.0 5.26e-01 95.9% 33.1%
4929737 4144.1.1.0 ↗ alpha duplicates or obligate multimers › YejL-like › YejL-like › YejL-like 0.81 70.0 6.14e-01 100.0% 65.3%
4026417 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.79 68.0 6.00e-01 100.0% 68.0%
4109908 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.79 69.0 5.78e-01 100.0% 60.0%
1147932 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.78 69.0 5.72e-01 100.0% 60.0%
4230185 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.78 68.0 5.72e-01 100.0% 60.7%
4937556 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.77 65.0 6.15e-01 100.0% 83.3%
3973403 5043.1.1.0 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.76 66.0 6.23e-01 100.0% 83.3%
5043558 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.74 60.0 5.34e-01 93.9% 64.9%
144301 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.72 59.0 5.29e-01 95.9% 65.8%
4363 605.8.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › SpoOE-like 0.72 62.0 5.96e-01 100.0% 98.2%
3287592 3443.1.1.0 ↗ alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain 0.72 59.0 5.96e-01 95.9% 98.0%
3810451 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.71 57.0 4.76e-01 93.9% 50.0%
3482769 10.28.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 0.66 55.0 4.09e-01 100.0% 44.3%
4996523 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.63 53.0 3.57e-01 100.0% 24.0%