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713T_protein

Euk-Vir

Panthera_leo_polyomavirus_1

713T_protein__YP_009553613__Panthera_leo_polyomavirus_1__2170405

Identity

Accession:: YP_009553613 ↗
Protein ID:: 713T_protein
Kingdom:: euk

Quality

80.8 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Betapolyomavirus› Panthera_leo_polyomavirus_1

TaxID: 2170405

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D2 high residues 330-414

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	107.9	8.30e-31	100.0%	20.1%

D3 medium residues 236-321

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	56.2	6.20e-15	63.9%	57.5%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1z1dB00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.91	84.0	7.17e-01	100.0%	64.9%
4il7A00	2.60.120.1300	Mainly Beta › Sandwich › Jelly Rolls ›	0.62	34.0	3.45e-01	84.9%	54.1%
6l4lA01	3.10.310.10	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1	0.62	46.0	4.24e-01	80.2%	98.3%
4o9gA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.61	34.0	2.87e-01	86.0%	33.3%
5l6gA02	3.40.462.20	Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 ›	0.59	46.0	3.49e-01	88.4%	83.8%
4llgM00	3.10.20.510	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor	0.57	31.0	3.87e-01	77.9%	90.0%
4lizA00	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.53	38.0	3.35e-01	77.9%	74.6%
2i6tA02	3.90.110.10	Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	0.53	44.0	3.66e-01	91.9%	77.0%
2yvlA01	3.10.330.20	Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 ›	0.51	31.0	3.65e-01	75.6%	89.7%
1l3lA01	3.30.450.80	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain	0.51	36.0	2.99e-01	74.4%	75.9%
2rftA02	3.90.209.20	Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain	0.51	35.0	2.60e-01	72.1%	49.0%
5ja1B00	3.90.820.10	Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	0.50	32.0	3.56e-01	76.7%	84.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
143128	304.55.1.4 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › T_Ag_DNA_bind	0.93	80.0	7.02e-01	91.9%	64.7%
4552838	304.150.1.1 ↗	a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA	0.67	49.0	4.80e-01	86.0%	71.0%
5007155	304.163.1.0 ↗	a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain	0.66	34.0	4.49e-01	79.1%	95.6%
5001172	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.65	55.0	5.21e-01	97.7%	86.7%
4032691	304.150.1.1 ↗	a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA	0.63	46.0	4.51e-01	86.0%	69.5%
4995671	3115.1.1.12 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › PF30567	0.58	31.0	3.90e-01	79.1%	88.0%
3969006	3115.6.1.2 ↗	a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597	0.58	29.0	3.85e-01	77.9%	93.3%
4935672	2492.1.1.7 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ	0.54	38.0	3.28e-01	93.0%	45.7%
4954188	2492.1.1.7 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ	0.54	37.0	3.13e-01	93.0%	41.6%
3637444	4121.1.1.0 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like	0.52	41.0	2.88e-01	93.0%	27.8%
4458441	2010.1.1.1 ↗	a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV	0.52	36.0	3.02e-01	72.1%	83.9%
3412134	11.10.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like	0.51	35.0	3.22e-01	72.1%	77.2%
4943183	247.1.1.0 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase	0.51	44.0	3.14e-01	100.0%	77.9%

D4 medium residues 416-468_612-689

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D403-422_572-647

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	49.3	5.10e-13	64.9%	17.0%
PF06431.17	Polyoma_lg_T_C	43.6	2.70e-11	48.9%	11.5%

D5 medium residues 469-611

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	256.0	8.80e-76	100.0%	33.8%