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75L_protein

Euk-Vir

Yaba-like_disease_virus

75L_protein__NP_073460__Yaba-like_disease_virus__132475

Identity

Accession:: NP_073460 ↗
Protein ID:: 75L_protein
Kingdom:: euk

Quality

64.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba-like_disease_virus

TaxID: 132475

Cluster

View cluster (28 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-89

PDB

D2 high residues 398-583

PDB

Domain cluster: rep: RNA_polymerase-associated_protein_RAP94__YP_009046135__Penguinpox_virus__648998__D394-584

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03294.20 best	Pox_Rap94	337.3	2.80e-100	100.0%	23.4%

D3 medium residues 104-150_166-288

PDB

D4 medium residues 336-396

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03294.20 best	Pox_Rap94	98.6	4.20e-28	100.0%	7.7%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2re3B03	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.58	31.0	3.62e-01	70.5%	100.0%
3draB00	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.55	45.0	2.85e-01	95.1%	90.4%
2k4jA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	38.0	3.22e-01	96.7%	42.9%
4cc9A00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.54	39.0	2.53e-01	77.0%	21.5%
2nutB02	2.30.30.380	Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24	0.54	37.0	3.77e-01	73.8%	82.3%
2y8nB01	2.20.70.100	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.53	30.0	3.44e-01	80.3%	78.6%
1vwxp00	2.20.25.30	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.52	36.0	3.24e-01	82.0%	50.5%
1f7uA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	40.0	2.59e-01	96.7%	15.9%
1ffvB03	3.30.365.10	Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain	0.50	37.0	2.76e-01	88.5%	29.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3883421	234.1.1.0 ↗	a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases	0.65	48.0	3.55e-01	80.3%	84.8%
3931217	502.1.1.0 ↗	a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain	0.62	34.0	3.40e-01	82.0%	49.2%
3931141	381.1.1.0 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat	0.61	34.0	3.48e-01	80.3%	53.4%
3275726	3289.1.1.8 ↗	alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Strumpellin	0.61	48.0	2.64e-01	91.8%	21.1%
3579412	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.57	44.0	4.38e-01	96.7%	78.5%
5051592	2011.2.1.1 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1	0.56	35.0	2.35e-01	100.0%	14.4%
3519383	2003.1.10.6 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › GSH_synthase	0.54	45.0	3.72e-01	93.4%	88.2%
5043786	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.54	46.0	2.98e-01	100.0%	33.7%
3275056	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.53	39.0	2.77e-01	88.5%	24.5%
5028765	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.52	39.0	3.06e-01	96.7%	34.7%
3863964	381.1.1.3 ↗	few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC	0.52	39.0	3.39e-01	90.2%	51.6%
4031797	375.1.1.47 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC	0.52	33.0	3.45e-01	82.0%	70.9%
3500412	5001.1.1.7 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Frizzled	0.51	39.0	2.40e-01	86.9%	35.4%
3687813	210.2.1.1 ↗	a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C	0.50	40.0	2.66e-01	95.1%	62.5%
5010030	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.50	31.0	3.68e-01	100.0%	97.5%

D5 medium residues 641-797

PDB

Domain cluster: rep: RAP94_RNA_pol_assoc_protein__YP_008004477__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D643-819

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03294.20 best	Pox_Rap94	246.2	9.80e-73	100.0%	19.4%