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89L_protein

Euk-Vir

Yaba-like_disease_virus

89L_protein__NP_073474__Yaba-like_disease_virus__132475

Identity

Accession:
NP_073474 ↗
Protein ID:
89L_protein
Kingdom:
euk

Quality

76.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba-like_disease_virus

TaxID: 132475

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-241
PDB
Domain cluster: rep: capping_enzyme_small_subunit__YP_005296294__Cotia_virus_SPAn232__930275__D1-46_68-108_120-235
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03341.21 best Pox_mRNA-cap 402.7 1.40e-120 100.0% 79.9%
D2 medium residues 1-13_242-287
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03341.21 best Pox_mRNA-cap 77.8 1.50e-21 98.3% 17.6%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ok8A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 54.0 3.61e-01 78.0% 23.3%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 58.0 4.70e-01 100.0% 75.0%
4dxwB01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.67 58.0 4.75e-01 98.3% 83.5%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.62 50.0 3.21e-01 89.8% 85.2%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 54.0 4.43e-01 98.3% 96.4%
3gb8A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 54.0 3.09e-01 100.0% 12.3%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 52.0 4.47e-01 100.0% 66.3%
2kslA00 1.10.2010.20 Mainly Alpha › Orthogonal Bundle › Crustacean CHH/MIH/GIH neurohormone › 0.61 35.0 3.73e-01 84.7% 64.7%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.60 52.0 4.24e-01 96.6% 81.5%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.60 48.0 4.37e-01 89.8% 67.1%
4k5yA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 50.0 3.35e-01 98.3% 81.9%
1wu3I00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 50.0 3.69e-01 100.0% 70.2%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.57 46.0 3.09e-01 89.8% 31.7%
7jplA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 49.0 3.98e-01 98.3% 79.5%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 42.0 3.71e-01 86.4% 53.5%
1eq1A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.57 47.0 3.51e-01 96.6% 58.4%
2xi9A03 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 42.0 3.62e-01 88.1% 51.5%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 43.0 2.75e-01 88.1% 82.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4855947 2003.1.5.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Pox_mRNA-cap 0.94 88.0 5.43e-01 100.0% 99.7%
3727844 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.73 50.0 4.42e-01 78.0% 49.4%
4017411 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.70 51.0 3.82e-01 78.0% 46.0%
4027497 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.70 50.0 5.04e-01 89.8% 75.0%
3487803 3890.1.1.0 ↗ alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins 0.70 52.0 3.41e-01 78.0% 36.4%
3403640 3890.1.1.1 ↗ alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Bax1-I 0.68 50.0 3.38e-01 78.0% 38.6%
3615419 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.68 56.0 3.47e-01 89.8% 70.0%
3485540 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.66 56.0 4.11e-01 100.0% 49.7%
3717109 109.4.1.911 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.66 57.0 3.24e-01 100.0% 19.2%
4028957 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.66 57.0 4.19e-01 100.0% 65.5%
5039563 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.64 57.0 3.94e-01 100.0% 87.3%
3941632 1051.1.1.0 ↗ alpha superhelices › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain 0.64 56.0 4.67e-01 100.0% 56.2%
3593764 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 51.0 3.16e-01 100.0% 14.3%
3270696 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.64 55.0 4.63e-01 100.0% 87.6%
3732868 3924.1.1.1 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 0.63 55.0 3.41e-01 100.0% 45.2%
4983683 604.12.1.140 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF447_C 0.63 49.0 4.77e-01 100.0% 78.5%
4930579 5052.1.1.0 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein 0.63 50.0 3.24e-01 89.8% 87.4%
3503534 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.62 52.0 4.04e-01 100.0% 44.1%
3711476 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 52.0 4.50e-01 100.0% 82.0%
2036569 101.1.1.91 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sap1_N 0.61 55.0 4.43e-01 100.0% 76.6%
3586442 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.60 50.0 4.20e-01 98.3% 61.8%
2625321 7542.1.1.0 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.60 52.0 3.67e-01 100.0% 43.2%
3975121 604.2.1.1 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.60 50.0 4.09e-01 100.0% 48.7%
4881130 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.60 50.0 4.47e-01 100.0% 67.8%
3783378 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.52 36.0 3.66e-01 100.0% 73.3%
3313175 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.50 44.0 3.31e-01 98.3% 45.6%